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[192587_at]

Description K01C8.3 /REP_DB=WormBase Gene ID /WP=CE21011 /CHR=2 /FEA=Sanger Annotation /DEF=aromatic-L-amino-acid decarboxylase (HINXTON) TR:Q21087 protein_id:CAA88862.1
Cluster 6grp_high1_10_10 > 88      6grp_total > 78      4grp_total > 61      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 147.1
(3)
P 		121.4
(1.7)
P 		138.2
(2.6)
P 		26.8
(-3)
A 		120
B 136.4
(3)
P 		102
(0.1)
P 		114.2
(1.1)
P 		65.4
(-3)
A 		71
C 125.6
(2.1)
P 		115.7
(1.6)
P 		141.6
(3)
P 		33.6
(-3)
A 		108
avr 136.4
(3) 		113
(1.5) 		131.3
(2.7) 		41.9
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 553
1 2 3 4 5 6 range
A 136.7
(-2)
P 		126.9
(-2.1)
P 		58.1
(-3)
A 		142.1
(-1.9)
P 		311
(0.3)
P 		514.6
(3)
P 		457
B 168.8
(-1.8)
P 		70.6
(-2.9)
P 		60.9
(-3)
M 		106.8
(-2.5)
P 		333.2
(-0)
P 		611
(3)
P 		550
C 203
(-1.6)
P 		80.4
(-3)
A 		100.2
(-2.8)
P 		98.2
(-2.8)
P 		359.7
(0.3)
P 		591.9
(3)
P 		512
avr 169.5
(-1.8) 		92.6
(-2.8) 		73.1
(-3) 		115.7
(-2.5) 		334.6
(0.1) 		572.5
(3) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 53.6
(3)
P 		26.3
(-0.3)
P 		36.1
(0.9)
P 		3.9
(-3)
A 		50
B 43.5
(3)
P 		25.2
(-0.7)
P 		26.5
(-0.4)
P 		13.9
(-3)
A 		30
C 41.6
(1.9)
P 		33.3
(0.8)
P 		49.3
(3)
P 		5.7
(-3)
A 		44
avr 46.2
(3) 		28.3
(0.2) 		37.3
(1.6) 		7.8
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 25.2
(-2.3)
P 		45.1
(-1.3)
P 		12.6
(-3)
A 		36
(-1.8)
P 		93.9
(1.3)
P 		125.3
(3)
P 		113
B 58.7
(-1.8)
P 		23.5
(-2.8)
P 		14.8
(-3)
M 		28.3
(-2.6)
P 		135.4
(0.4)
P 		227.8
(3)
P 		213
C 75.2
(-1.1)
P 		24.5
(-2.8)
A 		25.5
(-2.8)
P 		19.7
(-3)
P 		116.4
(0.3)
P 		198.1
(3)
P 		178
avr 53
(-1.7) 		31
(-2.5) 		17.6
(-3) 		28
(-2.6) 		115.2
(0.5) 		183.7
(3) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192587_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2824
Sequence Type Exemplar sequence
Representative Public ID K01C8.3 NCBI
Target Description K01C8.3 /REP_DB=WormBase Gene ID /WP=CE21011 /CHR=2 /FEA=Sanger Annotation /DEF=aromatic-L-amino-acid decarboxylase (HINXTON) TR:Q21087 protein_id:CAA88862.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063342(11), NM_063343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063342 NCBI Caenorhabditis elegans Tyrosin DeCarboxylase family member (tdc-1) (tdc-1) mRNA, complete cds. 11/11 A 
NM_063343 NCBI Caenorhabditis elegans Tyrosin DeCarboxylase family member (tdc-1) (tdc-1) mRNA, complete cds. 11/11 None
SNAP00000019056 ENSEMBL cdna:SNAP chromosome:CEL140:II:8270530:8273464:1 11/11 None
GENEFINDER00000019068 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8270530:8273464:1 11/11 None
K01C8.3b ENSEMBL cdna:known chromosome:CEL140:II:8270530:8273506:1 gene:K01C8.3 11/11 A 
K01C8.3a ENSEMBL cdna:known chromosome:CEL140:II:8270530:8273083:1 gene:K01C8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8270526-8272939(+) 100.0 100.0
Public Domain and Genome References
Ensembl K01C8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42319 Hypothetical protein K01C8.3b [Caenorhabditis elegans] ref|NP_495743.1| Tyrosin DeCarboxylase family member (tdc-1) [Caenorhabditis elegans] 0.0
blast CAE57674 Hypothetical protein CBG00668 [Caenorhabditis briggsae] 0.0
blast CAA88862 Hypothetical protein K01C8.3a [Caenorhabditis elegans] ref|NP_495744.1| Tyrosin DeCarboxylase family member (tdc-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Pfam IPR002129 EMBL-EBI Pyridoxal-dependent decarboxylase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192587_AT
tggagacacttctgagagcggacgccaagtttgaaatcgtcaacgaggttatcatgggac
ttgtgtgtttcagaatgaagggtgatgatgagctcaaccaaacccttttgactcgtctca
acgcttctgggcggattcacatggttcccgcatcactgggcgatcgttttgtgatccgct
tctgtgtatgtgccgaaaatgcaacagataaagacattgaggtcgcctacgaaattattg
cacaagccactcaacatgttcttcacgacagtgtaaaagctgtgatcgctgaggaagatg
aagaagctgtggctctagaggagatggttgctgatttgaacattactgaaactcctgaaa
agtgtcttactcgacagaactcggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGACACTTCTGAGAGCGGACGC 533 549 1400 Antisense
GAGCGGACGCCAAGTTTGAAATCGT 84 387 1415 Antisense
GGTTATCATGGGACTTGTGTGTTTC 704 505 1446 Antisense
GAGCTCAACCAAACCCTTTTGACTC 469 387 1489 Antisense
TCTCAACGCTTCTGGGCGGATTCAC 109 613 1515 Antisense
TGGGCGGATTCACATGGTTCCCGCA 559 553 1527 Antisense
CGCATCACTGGGCGATCGTTTTGTG 708 251 1548 Antisense
TGTGATCCGCTTCTGTGTATGTGCC 71 557 1569 Antisense
GGTCGCCTACGAAATTATTGCACAA 308 503 1620 Antisense
GCACAAGCCACTCAACATGTTCTTC 607 317 1639 Antisense
GTGTCTTACTCGACAGAACTCGGCA 422 485 1761 Antisense
Sequence Source Affymetrix Proprietary Database