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[192586_at] testis-specific protein TPX-1 like

Description F49E11.5 /REP_DB=WormBase Gene ID /WP=CE05901 /TR=Q20609 /GB=CAA94349.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_total > 30      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 34.1
(-3)
A 		88.4
(2.6)
P 		61.5
(-0.2)
A 		91.8
(3)
A 		58
B 35.3
(-1.6)
A 		94.2
(2.1)
A 		109
(3)
P 		13.8
(-3)
A 		95
C 45.3
(-3)
A 		94.5
(0.1)
P 		99.1
(0.4)
A 		139.3
(3)
A 		94
avr 38.2
(-3) 		92.4
(3) 		89.9
(2.7) 		81.6
(1.8) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 50.5
(-3)
A 		93.1
(0.8)
P 		117
(3)
P 		106.4
(2)
P 		54.9
(-2.6)
A 		55.1
(-2.6)
A 		67
B 94
(2)
P 		105.4
(3)
P 		74.8
(0.4)
A 		101.4
(2.7)
P 		76.6
(0.5)
P 		35.3
(-3)
A 		70
C 71
(-0.7)
A 		99.4
(1.1)
P 		53
(-1.9)
A 		128.2
(3)
P 		87.9
(0.4)
P 		36
(-3)
A 		92
avr 71.8
(-0.5) 		99.3
(1.9) 		81.6
(0.4) 		112
(3) 		73.1
(-0.3) 		42.1
(-3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 12.4
(-3)
A 		19.2
(3)
P 		16.1
(0.3)
A 		13.4
(-2.1)
A 		7
B 11.3
(-0.8)
A 		23.3
(2.5)
A 		25.3
(3)
P 		2.9
(-3)
A 		22
C 15
(-3)
A 		27.2
(0.8)
P 		34.5
(3)
A 		23.5
(-0.4)
A 		20
avr 12.9
(-3) 		23.2
(2) 		25.3
(3) 		13.3
(-2.8) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 9.3
(-3)
A 		33.1
(3)
P 		25.5
(1.1)
P 		27
(1.5)
P 		16.6
(-1.2)
A 		13.4
(-2)
A 		24
B 32.7
(2.3)
P 		35.1
(3)
P 		18.2
(-1.6)
A 		26.9
(0.8)
P 		31.1
(1.9)
P 		13.2
(-3)
A 		22
C 26.3
(1.7)
A 		30.3
(3)
P 		13.5
(-2.5)
A 		25.8
(1.5)
P 		28.5
(2.4)
P 		12.1
(-3)
A 		18
avr 22.8
(-0) 		32.8
(3) 		19.1
(-1.1) 		26.6
(1.1) 		25.4
(0.8) 		12.9
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9687
Sequence Type Exemplar sequence
Representative Public ID F49E11.5 NCBI
Target Description F49E11.5 /REP_DB=WormBase Gene ID /WP=CE05901 /TR=Q20609 /GB=CAA94349.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070097 NCBI Caenorhabditis elegans F49E11.5 (F49E11.5) mRNA, complete cds. 11/11 None
GENEFINDER00000011578 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13048466:13049805:1 11/11 None
F49E11.5 ENSEMBL cdna:known chromosome:CEL140:IV:13048466:13049805:1 gene:F49E11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011571 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13048471-13049811(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Ensembl F49E11.5
Entrez Gene 186049 Entrez gene
SwissProt Q20609 EMBL-EBI
WormBase CE05901 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94349 Hypothetical protein F49E11.5 [Caenorhabditis elegans] ref|NP_502498.1| F49E11.5 [Caenorhabditis elegans] 1.0E-126
blast CAA94335 Hypothetical protein C39E9.2 [Caenorhabditis elegans] ref|NP_502506.1| C39E9.2 [Caenorhabditis elegans] 5.0E-56
blast CAE58674 Hypothetical protein CBG01847 [Caenorhabditis briggsae] 6.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 2.5E-55
Sequence
Target Sequence 
>C. ELEGANS:192586_AT
acttccggctaatttgtttgctgatattttcattttgcgaaactttatgcgagttctctg
aaactggtaaaaactacattttatctcgccacaactacctccgatctcaaattgctctag
gaaaatatgtggcaggaaattctacaaaaccctctgcttccaacatgatgaagctaatct
gggacacgactttagaaacaacagctcaagattattcaactggatgtcctacaggacact
ctgcaagtcgagcgaatattggagagaatatgtattggtggacatctccagttgtcactc
aaaccgatgcagaacttcttggaaatcggtcggcgaacttgtgggaaagtgaatttcaaa
ggttcggatggaacggaaatctactgacagaggagctgtttaacagtggaattggacacg
ctacacagatggcatgggctactactaacaaaataggttgtggaatttcaaaatgttcaa
gcgattcctttggtacacagtatgttgttgtgtgcctctactctcctgctgggaactaca
ttggaatggatatctataaatcaggagaaacctgctctaactgtccagatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCCGGCTAATTTGTTTGCTGAT 627 103 23 Antisense
AAAACTACATTTTATCTCGCCACAA 427 131 92 Antisense
CAACTACCTCCGATCTCAAATTGCT 249 187 114 Antisense
GGAAATTCTACAAAACCCTCTGCTT 389 527 157 Antisense
GTCCTACAGGACACTCTGCAAGTCG 658 473 248 Antisense
TGGTGGACATCTCCAGTTGTCACTC 471 553 298 Antisense
GACACGCTACACAGATGGCATGGGC 474 367 437 Antisense
GTTCAAGCGATTCCTTTGGTACACA 135 445 497 Antisense
AGTATGTTGTTGTGTGCCTCTACTC 486 59 521 Antisense
TCTACTCTCCTGCTGGGAACTACAT 185 615 539 Antisense
AAACCTGCTCTAACTGTCCAGATGG 407 125 590 Antisense
Sequence Source Affymetrix Proprietary Database