[Home] | [Total List]

[192584_at] XPG N-terminal domain, XPG I-region

Description F45G2.3 /REP_DB=WormBase Gene ID /WP=CE16046 /TR=O62245 /GB=CAB07612.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=XPG N-terminal domain, XPG I-region
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 49      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 207.5
(-3)
P 		335.7
(3)
P 		326.1
(2.6)
P 		227.9
(-2)
P 		128
B 228.2
(-0.3)
P 		281.6
(3)
P 		242.8
(0.6)
P 		185.6
(-3)
P 		96
C 177
(-3)
P 		274.2
(2)
P 		293.9
(3)
P 		231
(-0.2)
P 		117
avr 204.2
(-3) 		297.2
(3) 		287.6
(2.4) 		214.8
(-2.3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 295.7
(-0.3)
P 		141.3
(-3)
P 		186.6
(-2.2)
P 		239.9
(-1.3)
P 		341.1
(0.5)
P 		480.3
(3)
P 		339
B 133.8
(-3)
P 		217.4
(-1.5)
P 		243.2
(-1.1)
P 		291.9
(-0.2)
P 		314.2
(0.2)
P 		475.1
(3)
P 		341
C 196.2
(-3)
P 		245.2
(-1.9)
P 		239
(-2)
P 		309
(-0.5)
P 		273.6
(-1.3)
P 		465.7
(3)
P 		270
avr 208.6
(-2.8) 		201.3
(-3) 		222.9
(-2.5) 		280.3
(-1.3) 		309.6
(-0.6) 		473.7
(3) 		272
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 75.5
(1.9)
P 		72.9
(1.6)
P 		85.3
(3)
P 		33.4
(-3)
P 		52
B 72.8
(3)
P 		69.5
(2.4)
P 		56.3
(0)
P 		39.6
(-3)
P 		33
C 58.6
(-1.1)
P 		78.8
(0.8)
P 		102.4
(3)
P 		38.9
(-3)
P 		64
avr 69
(1.3) 		73.7
(2) 		81.3
(3) 		37.3
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 54.5
(-1.9)
P 		50.3
(-2.2)
P 		40.6
(-3)
P 		60.8
(-1.4)
P 		102.9
(1.9)
P 		116.9
(3)
P 		76
B 46.5
(-3)
P 		72.4
(-1.8)
P 		59
(-2.4)
P 		77.3
(-1.6)
P 		127.6
(0.7)
P 		177.2
(3)
P 		131
C 72.7
(-2.2)
P 		74.8
(-2.1)
P 		60.8
(-3)
P 		62.1
(-2.9)
P 		88.5
(-1.3)
P 		155.9
(3)
P 		95
avr 57.9
(-2.7) 		65.8
(-2.2) 		53.5
(-3) 		66.7
(-2.2) 		106.3
(0.3) 		150
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192584_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7235
Sequence Type Exemplar sequence
Representative Public ID F45G2.3 NCBI
Target Description F45G2.3 /REP_DB=WormBase Gene ID /WP=CE16046 /TR=O62245 /GB=CAB07612.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=XPG N-terminal domain, XPG I-region
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067369 NCBI Caenorhabditis elegans F45G2.3 (F45G2.3) mRNA, complete cds. 11/11 A 
SNAP00000011668 ENSEMBL cdna:SNAP chromosome:CEL140:III:13423257:13425616:1 11/11 None
GENEFINDER00000011677 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13423257:13425616:1 11/11 None
F45G2.3 ENSEMBL cdna:known chromosome:CEL140:III:13423202:13425706:1 gene:F45G2.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13417516-13425612(+) 98.6 100.0
Public Domain and Genome References
Gene Title XPG N-terminal domain, XPG I-region
Ensembl F45G2.3
Entrez Gene 176765 Entrez gene
SwissProt O62245 EMBL-EBI
WormBase CE28728 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4518 nuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07612 Hypothetical protein F45G2.3 [Caenorhabditis elegans] ref|NP_499770.1| F45G2.3 [Caenorhabditis elegans] 0.0
blast CAE73700 Hypothetical protein CBG21211 [Caenorhabditis briggsae] 0.0
blast AAH44187 Hypothetical protein LOC406778 [Danio rerio] ref|NP_998634.1| hypothetical protein LOC406778 [Danio rerio] 4.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR006086 EMBL-EBI XPG I domain 4.6E-26
Pfam IPR006085 EMBL-EBI XPG N-terminal 1.2E-17
Sequence
Target Sequence 
>C. ELEGANS:192584_AT
tgaagcaattcatggcagatatcgaaaaagaaaagaaggctatcaaaaaacggaaaaatg
cgcctcaagtggactataatgctgatgttcttctcaaaaagtatgcagaaccaccaccgg
agaagagacaaaagattctggaagtaatcgatgatgatttctcggaattttttcaagaaa
aagtgaaagaaaataccaaggaaagtgttgccgaggaaaaagttgaaaatagcaacgaag
agctgaagcctcctccgattcttcgaaaagcggtttcaactcctgattcggcaagaaaaa
ctcacaaatttcaatcgccgcttctcaatcatcaaaattcggctcctccgtcgttgccgg
atagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCAATTCATGGCAGATATCGA 368 573 3269 Antisense
GAAAAATGCGCCTCAAGTGGACTAT 62 355 3321 Antisense
GGACTATAATGCTGATGTTCTTCTC 206 525 3339 Antisense
AAAAAGTATGCAGAACCACCACCGG 600 129 3364 Antisense
GCAGAACCACCACCGGAGAAGAGAC 613 311 3373 Antisense
CCTCCTCCGATTCTTCGAAAAGCGG 218 267 3517 Antisense
GAAAAGCGGTTTCAACTCCTGATTC 155 351 3533 Antisense
GGTTTCAACTCCTGATTCGGCAAGA 589 505 3540 Antisense
AACTCACAAATTTCAATCGCCGCTT 55 141 3567 Antisense
ATCATCAAAATTCGGCTCCTCCGTC 510 29 3596 Antisense
CTCCTCCGTCGTTGCCGGATAGAAA 196 235 3611 Antisense
Sequence Source Affymetrix Proprietary Database