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[192582_at] Forkhead-associated (FHA) domain

Description C01G6.5 /REP_DB=WormBase Gene ID /WP=CE00867 /TR=SW:P46012 /GB=CAA84636.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Forkhead-associated (FHA) domain
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 47      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 73      6grp_total > 47      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 512
1 2 3 4 range
A 893.3
(3)
P 		413.6
(-3)
P 		409.8
(-3)
P 		894.5
(3)
P 		485
B 731.6
(0.8)
P 		422.8
(-2.9)
P 		413.4
(-3)
P 		921.9
(3)
P 		509
C 650.7
(0.2)
P 		465.7
(-2.8)
P 		450.2
(-3)
P 		828.9
(3)
P 		379
avr 758.5
(1.4) 		434
(-2.9) 		424.5
(-3) 		881.8
(3) 		457

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 679
1 2 3 4 5 6 range
A 487.5
(-1.3)
P 		647.2
(0.7)
P 		347.4
(-3)
P 		540.3
(-0.6)
P 		398.1
(-2.4)
P 		839.7
(3)
P 		492
B 445.6
(0.4)
P 		513.2
(2.6)
P 		429.4
(-0.2)
P 		441.7
(0.3)
P 		342.2
(-3)
P 		525.8
(3)
P 		184
C 1021.1
(3)
P 		582.3
(-1.4)
P 		622.3
(-1)
P 		416.4
(-3)
P 		463.9
(-2.5)
P 		515.1
(-2)
P 		605
avr 651.4
(3) 		580.9
(1.3) 		466.4
(-1.4) 		466.1
(-1.4) 		401.4
(-3) 		626.9
(2.4) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 325.2
(3)
P 		89.8
(-3)
P 		107.1
(-2.6)
P 		130.9
(-2)
P 		235
B 233.3
(3)
P 		104.4
(-2.6)
P 		95.8
(-3)
P 		196.5
(1.4)
P 		138
C 215.4
(3)
P 		133.9
(-3)
P 		156.9
(-1.3)
P 		139.8
(-2.6)
P 		82
avr 258
(3) 		109.4
(-3) 		119.9
(-2.6) 		155.7
(-1.1) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 303
1 2 3 4 5 6 range
A 89.9
(-2.4)
P 		230.2
(3)
P 		75.7
(-3)
P 		137
(-0.6)
P 		120.1
(-1.3)
P 		204.4
(2)
P 		155
B 155
(0.3)
P 		170.8
(1.3)
P 		104.3
(-3)
P 		117
(-2.2)
P 		139
(-0.7)
P 		196.1
(3)
P 		92
C 378.5
(3)
P 		177.7
(-1.1)
P 		158.4
(-1.5)
P 		83.7
(-3)
P 		150.1
(-1.6)
P 		172.4
(-1.2)
P 		295
avr 207.8
(3) 		192.9
(2.1) 		112.8
(-3) 		112.6
(-3) 		136.4
(-1.5) 		191
(1.9) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2676
Sequence Type Exemplar sequence
Representative Public ID C01G6.5 NCBI
Target Description C01G6.5 /REP_DB=WormBase Gene ID /WP=CE00867 /TR=SW:P46012 /GB=CAA84636.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Forkhead-associated (FHA) domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063576 NCBI Caenorhabditis elegans C01G6.5 (C01G6.5) mRNA, complete cds. 11/11 None
SNAP00000013218 ENSEMBL cdna:SNAP chromosome:CEL140:II:9275696:9279951:-1 11/11 None
GENEFINDER00000013241 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9275696:9279951:-1 11/11 None
C01G6.5 ENSEMBL cdna:known chromosome:CEL140:II:9274880:9280009:-1 gene:C01G6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9275692-9279948(-) 100.0 100.0
Public Domain and Genome References
Gene Title Forkhead-associated (FHA) domain
Ensembl C01G6.5
Entrez Gene 174470 Entrez gene
SwissProt P46012 EMBL-EBI
WormBase CE00867 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84636 Hypothetical protein C01G6.5 [Caenorhabditis elegans] ref|NP_495977.1| C01G6.5 [Caenorhabditis elegans] sp|P46012|YKI5_CAEEL Hypothetical protein C01G6.5 in chromosome III 0.0
blast CAE57846 Hypothetical protein CBG00879 [Caenorhabditis briggsae] 8.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 5.3E-13
Sequence
Target Sequence 
>C. ELEGANS:192582_AT
gaaggtcactccacgaggaggccgtagaaaaaacatgaaaagaacagccagtcaatcagc
gatcaaggaaagaaagacaaaagacaaggacgtagagccagaagaagcaccgaagaagaa
acgaggaaggaagaaggcgacacctaccgaagaagaagaaccaccaaaaacggagccaag
caaggaaagatgtggtgtagcaaaaggacattgtatatctgccaaatacgaaaagagaaa
aaacttacaatgggtttcctgctccatctgtaatcaatggttccacgtgtggtgtgttcg
tcttgacaacgtttgttatcgagaagacgagaccttcctgtgctgtggatcacatccatc
aaaagaagccaaagacgcgttagccggtcgagtttatgcgaggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTCACTCCACGAGGAGGCCGT 394 333 2418 Antisense
GAACAGCCAGTCAATCAGCGATCAA 97 351 2459 Antisense
GGAAGAAGGCGACACCTACCGAAGA 696 525 2546 Antisense
AACTTACAATGGGTTTCCTGCTCCA 393 139 2659 Antisense
TTTCCTGCTCCATCTGTAATCAATG 58 671 2672 Antisense
GTAATCAATGGTTCCACGTGTGGTG 74 463 2687 Antisense
CGTGTGGTGTGTTCGTCTTGACAAC 570 243 2703 Antisense
GAGAAGACGAGACCTTCCTGTGCTG 678 391 2738 Antisense
CTTCCTGTGCTGTGGATCACATCCA 198 219 2751 Antisense
GAAGCCAAAGACGCGTTAGCCGGTC 708 339 2782 Antisense
TAGCCGGTCGAGTTTATGCGAGGTA 375 651 2798 Antisense
Sequence Source Affymetrix Proprietary Database