[Home] | [Total List]

[192581_s_at]

Description W05G11.6 /REP_DB=WormBase Gene ID /WP=CE19610 /TR=O44906 /GB=AAC71149.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=phosphoenolpyruvate carboxykinase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 06      6grp_total > 52      4grp_total > 46      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12643
1 2 3 4 range
A 18176.5
(3)
P 		12628.5
(0.1)
P 		9213
(-1.7)
P 		6738.9
(-3)
P 		11438
B 18951.7
(3)
P 		11684.4
(-0.4)
P 		9362.7
(-1.6)
P 		6309
(-3)
P 		12643
C 17060.7
(3)
P 		10191.8
(-1.1)
P 		7746.2
(-2.5)
P 		6942.7
(-3)
P 		10118
avr 18063
(3) 		11501.6
(-0.5) 		8774
(-1.9) 		6663.5
(-3) 		11400

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6358
1 2 3 4 5 6 range
A 8189.6
(-1.9)
P 		9598.5
(0.6)
P 		10951.2
(3)
P 		9656.1
(0.7)
P 		7568.1
(-3)
P 		9322.6
(0.1)
P 		3383
B 7537.3
(-2)
P 		9257.4
(-0.1)
P 		12127.6
(3)
P 		9786.9
(0.5)
P 		7070.9
(-2.5)
P 		6567.6
(-3)
P 		5560
C 7648.9
(-1.8)
P 		9739.7
(0.2)
P 		12707.5
(3)
P 		8412.2
(-1.1)
P 		7736
(-1.7)
P 		6349.5
(-3)
P 		6358
avr 7791.9
(-2.5) 		9531.9
(-0.2) 		11928.8
(3) 		9285.1
(-0.5) 		7458.3
(-2.9) 		7413.2
(-3) 		4516
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5632
1 2 3 4 range
A 6618.1
(3)
P 		2741.3
(-1.1)
P 		2408.5
(-1.5)
P 		986.4
(-3)
P 		5632
B 6043.5
(3)
P 		2885.8
(-1)
P 		2169.5
(-1.9)
P 		1344.4
(-3)
P 		4699
C 5647.6
(3)
P 		2930.2
(-0.6)
P 		2699.8
(-1)
P 		1170.7
(-3)
P 		4477
avr 6103.1
(3) 		2852.4
(-1) 		2425.9
(-1.5) 		1167.2
(-3) 		4936

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1904
1 2 3 4 5 6 range
A 1509.7
(-3)
P 		3413.7
(3)
P 		2384.9
(-0.2)
P 		2449
(-0)
P 		2283.7
(-0.6)
P 		2269.8
(-0.6)
P 		1904
B 2622.6
(-1.4)
P 		3081.4
(3)
P 		2944.9
(1.7)
P 		2592.2
(-1.6)
P 		2872.8
(1)
P 		2449
(-3)
P 		632
C 2835.1
(1.4)
P 		2971.9
(2)
P 		3234.3
(3)
P 		1691.7
(-3)
P 		2503.3
(0.2)
P 		2125.5
(-1.3)
P 		1543
avr 2322.5
(-2.5) 		3155.7
(3) 		2854.7
(1) 		2244.3
(-3) 		2553.3
(-1) 		2281.4
(-2.8) 		911
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192581_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8326
Sequence Type Exemplar sequence
Representative Public ID W05G11.6 NCBI
Target Description W05G11.6 /REP_DB=WormBase Gene ID /WP=CE19610 /TR=O44906 /GB=AAC71149.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=phosphoenolpyruvate carboxykinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181906(11), NM_181905(11), NM_064733(11), NM_181904(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181906 NCBI Caenorhabditis elegans W05G11.6d (W05G11.6) mRNA, complete cds. 11/11 None
NM_181905 NCBI Caenorhabditis elegans W05G11.6c (W05G11.6) mRNA, complete cds. 11/11 None
NM_064733 NCBI Caenorhabditis elegans W05G11.6a (W05G11.6) mRNA, complete cds. 11/11 None
NM_181904 NCBI Caenorhabditis elegans W05G11.6b (W05G11.6) mRNA, complete cds. 11/11 None
W05G11.6d.1 ENSEMBL cdna:known chromosome:CEL140:III:62887:66259:-1 gene:W05G11.6 11/11 None
W05G11.6d.2 ENSEMBL cdna:known chromosome:CEL140:III:62887:66261:-1 gene:W05G11.6 11/11 None
W05G11.6c ENSEMBL cdna:known chromosome:CEL140:III:62887:66259:-1 gene:W05G11.6 11/11 None
W05G11.6b.2 ENSEMBL cdna:known chromosome:CEL140:III:62988:66259:-1 gene:W05G11.6 11/11 None
W05G11.6b.1 ENSEMBL cdna:known chromosome:CEL140:III:62988:66259:-1 gene:W05G11.6 11/11 None
W05G11.6a ENSEMBL cdna:known chromosome:CEL140:III:62988:66255:-1 gene:W05G11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
W05G11.6d.4 5/11 Cross Hyb Matching Probes None
W05G11.6d.3 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:62987-66255(-) 100.0 100.0
Public Domain and Genome References
Ensembl W05G11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN65288 Hypothetical protein W05G11.6d [Caenorhabditis elegans] ref|NP_871635.1| W05G11.6d [Caenorhabditis elegans] 0.0
blast AAC71149 Hypothetical protein W05G11.6a [Caenorhabditis elegans] ref|NP_497134.1| W05G11.6a [Caenorhabditis elegans] 0.0
blast CAE57495 Hypothetical protein CBG00466 [Caenorhabditis briggsae] 0.0
blast AAN65286 Hypothetical protein W05G11.6b [Caenorhabditis elegans] ref|NP_871633.1| W05G11.6b [Caenorhabditis elegans] 0.0
blast AAN65287 Hypothetical protein W05G11.6c [Caenorhabditis elegans] ref|NP_871634.1| W05G11.6c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008209 EMBL-EBI Phosphoenolpyruvate carboxykinase (GTP) 1.0E-126
Pfam IPR008209 EMBL-EBI Phosphoenolpyruvate carboxykinase (GTP) 1.0E-126
Pfam IPR008209 EMBL-EBI Phosphoenolpyruvate carboxykinase (GTP) 1.0E-126
Pfam IPR008209 EMBL-EBI Phosphoenolpyruvate carboxykinase (GTP) 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192581_S_AT
attcatccagattgggaggccccacaaggagtaccaatcgacgctatcgtcttcggaggc
cgccgtccagagggtgtcccactcgtcttcgagtccttctcctgggagcacggaatcctt
gtcggagccctcgtcaaatccgagaccaccgccgccgccgagttcactggcaagaatgtg
atgcacgatccaatggcaatgagaccattcatgggatacaactacggtaagtacttggag
cactggatcaagctcggcaaggctccacacaaggcgccaaagatcttccacgtcaactgg
ttccgtgagactaaggatcacaagttcttgtggccaggattcggagataacatccgtgtt
cttgattggatcttgagaagagtcgctggtggagaggaggagatcgctatcgagaccgcg
atcggatacgttccaaagcgtggaaccatcaacctggacggcctcccacgcatcgactgg
aacgatttgatgagcattccaaaggactactgggttgaagatgttgacgagagcagacac
ttcctcgacacccaagtcggatccgatctcccacaaccgatcagagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCATCCAGATTGGGAGGCCCCAC 480 11 1342 Antisense
GGAGTACCAATCGACGCTATCGTCT 533 517 1369 Antisense
CGCCGCCGAGTTCACTGGCAAGAAT 345 257 1494 Antisense
ACACAAGGCGCCAAAGATCTTCCAC 269 111 1608 Antisense
ATCTTCCACGTCAACTGGTTCCGTG 325 31 1624 Antisense
GAGACCGCGATCGGATACGTTCCAA 226 395 1753 Antisense
AAGCGTGGAACCATCAACCTGGACG 414 149 1777 Antisense
CTCCCACGCATCGACTGGAACGATT 9 235 1804 Antisense
GACGAGAGCAGACACTTCCTCGACA 1 379 1867 Antisense
CGACACCCAAGTCGGATCCGATCTC 524 249 1887 Antisense
CGATCTCCCACAACCGATCAGAGAT 256 249 1905 Antisense
Sequence Source Affymetrix Proprietary Database