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[192576_s_at]

Description C09H6.1 /REP_DB=WormBase Gene ID /WP=CE15609 /TR=O17582 /GB=CAB03868.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (11 domains)
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 45      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 31      6grp_total > 35      4grp_total > 05      6grp_highest_sub > De      6grp_cgc > 35      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 645
1 2 3 4 range
A 963.5
(-0)
P 		662.8
(-3)
P 		698.2
(-2.6)
P 		1265.9
(3)
P 		603
B 948.6
(-1)
P 		770.6
(-3)
P 		816.8
(-2.5)
P 		1308.2
(3)
P 		538
C 873.2
(-1.7)
P 		802.7
(-2.8)
P 		793.5
(-3)
P 		1153.8
(3)
P 		360
avr 928.4
(-0.8) 		745.4
(-3) 		769.5
(-2.7) 		1242.6
(3) 		497

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 666
1 2 3 4 5 6 range
A 1197.2
(3)
P 		1171.9
(2.7)
P 		1051.4
(1.3)
P 		798.8
(-1.7)
P 		689.1
(-3)
P 		915.1
(-0.3)
P 		508
B 1090.6
(3)
P 		1030
(2.4)
P 		1086.5
(3)
P 		962.6
(1.6)
P 		531.1
(-3)
P 		836.1
(0.3)
P 		560
C 848.7
(0.5)
P 		1037
(3)
P 		1034.7
(3)
P 		1005.2
(2.6)
P 		590.1
(-3)
P 		923.5
(1.5)
P 		447
avr 1045.5
(2.6) 		1079.6
(3) 		1057.5
(2.7) 		922.2
(1) 		603.4
(-3) 		891.6
(0.6) 		476
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 350.8
(3)
P 		143.9
(-3)
P 		182.5
(-1.9)
P 		185.3
(-1.8)
P 		207
B 302.5
(3)
P 		190.3
(-2.9)
P 		189.3
(-3)
P 		278.8
(1.7)
P 		113
C 289.1
(3)
P 		230.8
(-0.7)
P 		276.6
(2.2)
P 		194.6
(-3)
P 		95
avr 314.1
(3) 		188.3
(-3) 		216.1
(-1.7) 		219.6
(-1.5) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 220.7
(-2.5)
P 		416.8
(3)
P 		229
(-2.3)
P 		202.6
(-3)
P 		207.9
(-2.9)
P 		222.8
(-2.4)
P 		214
B 379.5
(3)
P 		342.9
(1.7)
P 		263.8
(-1.2)
P 		255
(-1.6)
P 		215.8
(-3)
P 		311.8
(0.5)
P 		164
C 314.6
(2.9)
P 		316.4
(3)
P 		263.4
(0.5)
P 		202.1
(-2.5)
P 		191
(-3)
P 		309.1
(2.7)
P 		125
avr 304.9
(0.9) 		358.7
(3) 		252.1
(-1.2) 		219.9
(-2.4) 		204.9
(-3) 		281.2
(-0) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192576_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2362
Sequence Type Exemplar sequence
Representative Public ID C09H6.1 NCBI
Target Description C09H6.1 /REP_DB=WormBase Gene ID /WP=CE15609 /TR=O17582 /GB=CAB03868.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (11 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025823(11), NM_001025822(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025823 NCBI Caenorhabditis elegans Suppressor of PResenilin defect family member (spr-4) (spr-4) mRNA, complete cds. 11/11 None
NM_001025822 NCBI Caenorhabditis elegans Suppressor of PResenilin defect family member (spr-4) (spr-4) mRNA, complete cds. 11/11 None
SNAP00000018782 ENSEMBL cdna:SNAP chromosome:CEL140:I:8111732:8117068:1 11/11 None
GENEFINDER00000018789 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8111732:8117068:1 11/11 None
C09H6.1a ENSEMBL cdna:known chromosome:CEL140:I:8111732:8117248:1 gene:C09H6.1 11/11 None
C09H6.1b ENSEMBL cdna:known chromosome:CEL140:I:8111732:8117336:1 gene:C09H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8111662-8116999(+) 100.0 100.0
Public Domain and Genome References
Ensembl C09H6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE45043 Hypothetical protein C09H6.1b [Caenorhabditis elegans] ref|NP_001020994.1| Suppressor of PResenilin defect family member (spr-4) [Caenorhabditis elegans] pir||T19170 hypothetical protein C09H6.1 - Caenorhabditis elegans 0.0
blast CAB03868 Hypothetical protein C09H6.1a [Caenorhabditis elegans] ref|NP_001020993.1| Suppressor of PResenilin defect family member (spr-4) [Caenorhabditis elegans] sp|O17582|SPR4_CAEEL Suppressor of presenilin protein 0.0
blast CAE66542 Hypothetical protein CBG11849 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:192576_S_AT
gaaatttcatcgagcactctgcgtatcatcgacagcaattgattaatcgaatcaatataa
ctctgaaacgacaacctcctcgaatcgagtatcagagaccgaagcttaagcatcagtttg
tagccaaaaacgcgaaatactgcaagaaatgcacatttaaatgtgtatcacaaagcaatt
tcattgagcacttggacagacatggatggaatcaactttacaaatgttatagctgtgatt
attcggataacacaaaatctgttgtcgatttccatcaacttaatcatcatattgtcaaag
atcagacactacacagtatctgtcaatcagcaaagttccgactcgaaaatggagtaatac
agataccagagactgagaaatcaaaaccaacaccggatgagttcgtctccaagacgcgcg
ggttgctcaaatgtccgagttgtgagtatttctgtcacgtgtcatccgagttggcattcc
acatgtcagtgcatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTTCATCGAGCACTCTGCGTA 471 363 3362 Antisense
GCACTCTGCGTATCATCGACAGCAA 455 315 3375 Antisense
TGAAACGACAACCTCCTCGAATCGA 458 571 3425 Antisense
ATTTCATTGAGCACTTGGACAGACA 15 17 3539 Antisense
AATCTGTTGTCGATTTCCATCAACT 457 169 3617 Antisense
GTCAATCAGCAAAGTTCCGACTCGA 469 463 3683 Antisense
ACACCGGATGAGTTCGTCTCCAAGA 59 111 3751 Antisense
AAGACGCGCGGGTTGCTCAAATGTC 637 153 3772 Antisense
TGAGTATTTCTGTCACGTGTCATCC 43 569 3804 Antisense
CGTGTCATCCGAGTTGGCATTCCAC 331 245 3819 Antisense
GGCATTCCACATGTCAGTGCATCAT 513 535 3834 Antisense
Sequence Source Affymetrix Proprietary Database