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[192575_at] dihydroxyvitamin D3-induced protein

Description R06B9.1 /REP_DB=WormBase Gene ID /WP=CE16299 /TR=O17981 /GB=CAB05786.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=dihydroxyvitamin D3-induced protein
Cluster 6grp_total > 94      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 51.8
(-2.5)
A 		16.6
(-3)
A 		37.6
(-2.7)
A 		409
(3)
P 		392
B 19.1
(-3)
A 		46.8
(-2.6)
A 		28
(-2.9)
A 		425.6
(3)
P 		407
C 13.1
(-3)
A 		89.4
(-1.8)
A 		16.4
(-3)
A 		410.1
(3)
P 		397
avr 28
(-3) 		50.9
(-2.6) 		27.3
(-3) 		414.9
(3) 		388

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 28
(-3)
A 		34
(-2.8)
A 		88.2
(-1.4)
A 		208.9
(1.7)
P 		257.6
(3)
P 		214
(1.9)
P 		230
B 36.5
(-3)
A 		57.2
(-2.3)
A 		85
(-1.4)
P 		218
(3)
P 		192.1
(2.1)
P 		171.7
(1.5)
P 		182
C 38.9
(-2.8)
A 		26.8
(-3)
A 		116.4
(-1.3)
P 		142.1
(-0.9)
P 		350.4
(3)
P 		163
(-0.5)
P 		324
avr 34.5
(-3) 		39.3
(-2.9) 		96.5
(-1.4) 		189.7
(1) 		266.7
(3) 		182.9
(0.8) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 18.9
(-1.4)
A 		3.6
(-3)
A 		9.8
(-2.3)
A 		59.9
(3)
P 		56
B 6.1
(-3)
A 		11.6
(-2.6)
A 		6.5
(-3)
A 		90.7
(3)
P 		85
C 4.3
(-3)
A 		25.7
(-1)
A 		5.7
(-2.9)
A 		69.1
(3)
P 		65
avr 9.8
(-2.8) 		13.6
(-2.4) 		7.3
(-3) 		73.2
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 5.2
(-3)
A 		12.1
(-2.4)
A 		19.2
(-1.8)
A 		53
(1)
P 		77.7
(3)
P 		52.1
(0.9)
P 		73
B 12.7
(-3)
A 		19
(-2.4)
A 		20.6
(-2.3)
P 		57.8
(1.1)
P 		78
(3)
P 		64
(1.7)
P 		65
C 14.4
(-2.6)
A 		8.2
(-3)
A 		29.6
(-1.8)
P 		28.6
(-1.8)
P 		113.4
(3)
P 		54.6
(-0.4)
P 		105
avr 10.8
(-3) 		13.1
(-2.8) 		23.1
(-2.1) 		46.5
(-0.3) 		89.7
(3) 		56.9
(0.5) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192575_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3903
Sequence Type Exemplar sequence
Representative Public ID R06B9.1 NCBI
Target Description R06B9.1 /REP_DB=WormBase Gene ID /WP=CE16299 /TR=O17981 /GB=CAB05786.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=dihydroxyvitamin D3-induced protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064482 NCBI Caenorhabditis elegans R06B9.1 (R06B9.1) mRNA, complete cds. 11/11 None
SNAP00000002411 ENSEMBL cdna:SNAP chromosome:CEL140:II:13752217:13768300:1 11/11 None
GENEFINDER00000002415 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13763324:13768300:1 11/11 None
R06B9.1 ENSEMBL cdna:known chromosome:CEL140:II:13763324:13765449:1 gene:R06B9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13763320-13765446(+) 100.0 100.0
Public Domain and Genome References
Gene Title dihydroxyvitamin D3-induced protein
Ensembl R06B9.1
Entrez Gene 187635 Entrez gene
SwissProt O17981 EMBL-EBI
WormBase CE35900 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
7600 sensory perception inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05786 Hypothetical protein R06B9.1 [Caenorhabditis elegans] ref|NP_496883.2| R06B9.1 [Caenorhabditis elegans] 0.0
blast CAB05787 Hypothetical protein R06B9.3 [Caenorhabditis elegans] ref|NP_496882.1| R06B9.3 [Caenorhabditis elegans] 0.0
blast CAB05788 Hypothetical protein R06B9.4 [Caenorhabditis elegans] ref|NP_496881.1| R06B9.4 [Caenorhabditis elegans] 0.0
blast CAB05787 Hypothetical protein R06B9.3 [Caenorhabditis elegans] ref|NP_496882.1| R06B9.3 [Caenorhabditis elegans] 1.0E-174
blast CAB05786 Hypothetical protein R06B9.1 [Caenorhabditis elegans] ref|NP_496883.2| R06B9.1 [Caenorhabditis elegans] 1.0E-174
blast CAB05787 Hypothetical protein R06B9.3 [Caenorhabditis elegans] ref|NP_496882.1| R06B9.3 [Caenorhabditis elegans] 1.0E-172
blast AAF99937 Hypothetical protein F35F10.12 [Caenorhabditis elegans] ref|NP_503917.1| F35F10.12 [Caenorhabditis elegans] 1.0E-160
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 2.1E-34
Pfam IPR000698 EMBL-EBI Arrestin 6.2E-52
Pfam IPR000698 EMBL-EBI Arrestin 7.3E-50
Pfam IPR000698 EMBL-EBI Arrestin 2.4E-45
Pfam IPR000698 EMBL-EBI Arrestin 7.2E-29
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-29
Pfam IPR000698 EMBL-EBI Arrestin 6.7E-51
Pfam IPR000698 EMBL-EBI Arrestin 7.3E-50
Pfam IPR000698 EMBL-EBI Arrestin 1.7E-59
Pfam IPR000698 EMBL-EBI Arrestin 6.7E-51
Pfam IPR000698 EMBL-EBI Arrestin 7.3E-50
Pfam IPR000698 EMBL-EBI Arrestin 1.1E-60
Sequence
Target Sequence 
>C. ELEGANS:192575_AT
gcagtgcaaattcatcgcttatcgaaacgggactattttccgatttgatggaggttcgga
tacgctaatgtcaggatcttcgcagcaaacaaagtacgacactaagcccgttatcacgca
gacacagccgatgacagtgactccagggaatgagcacaagtttgtgctggaattccgtct
gccatctgtaactccaaccatctgtcggttctccccggtgattactgtagaatacgtggt
acaagtccgcgtggagaccacttcaacatgcgggagtgctgctaagtgtgaaatgccgat
ccttataggaactgtacctattcgaaattatcttccaccaccaattccaaacaactaccc
aattggcctgccaccaccgtatgctaatcttactgatgtgaatgtgccctgtccgagcgg
aggtagtggtacggcagtgattccaagtgctccaccaccatcctaccaggaatccatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGTGCAAATTCATCGCTTATCGA 626 311 702 Antisense
TACGCTAATGTCAGGATCTTCGCAG 660 647 762 Antisense
GTACGACACTAAGCCCGTTATCACG 653 457 795 Antisense
TTATCACGCAGACACAGCCGATGAC 4 681 812 Antisense
AGCCGATGACAGTGACTCCAGGGAA 22 83 827 Antisense
AGTTTGTGCTGGAATTCCGTCTGCC 201 63 860 Antisense
GTCCGCGTGGAGACCACTTCAACAT 517 475 946 Antisense
CAAACAACTACCCAATTGGCCTGCC 623 191 1049 Antisense
CCACCACCGTATGCTAATCTTACTG 670 273 1072 Antisense
TTACTGATGTGAATGTGCCCTGTCC 417 683 1091 Antisense
CCACCATCCTACCAGGAATCCATGT 465 271 1156 Antisense
Sequence Source Affymetrix Proprietary Database