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[192574_s_at] Zinc finger, C2H2 type (3 domains)

Description C27C12.2 /REP_DB=WormBase Gene ID /WP=CE20531 /TR=Q18250 /GB=CAA93744.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster 6grp_high1_10_10 > 27      4grp_high_8_8 > 25      6grp_total > 16      4grp_total > 38      6grp_high1_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 373.2
(3)
P 		210.8
(-0.9)
A 		125.2
(-3)
P 		207.5
(-1)
P 		248
B 422.2
(3)
P 		134.5
(-2.5)
A 		109.1
(-3)
A 		215
(-1)
P 		313
C 402
(3)
P 		214.1
(-1.5)
P 		148.8
(-3)
P 		192.2
(-2)
P 		253
avr 399.1
(3) 		186.5
(-1.7) 		127.7
(-3) 		204.9
(-1.3) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 350
(3)
P 		219.9
(-0.6)
P 		133.1
(-3)
P 		133.5
(-3)
M 		155
(-2.4)
A 		214.7
(-0.7)
P 		217
B 297
(3)
P 		205.4
(-0.3)
P 		165.9
(-1.7)
P 		184
(-1)
P 		128
(-3)
P 		181.5
(-1.1)
P 		169
C 335.9
(3)
P 		258.9
(0.8)
P 		151.6
(-2.2)
P 		172.7
(-1.6)
P 		132.9
(-2.7)
P 		121.8
(-3)
P 		214
avr 327.6
(3) 		228.1
(-0.2) 		150.2
(-2.6) 		163.4
(-2.2) 		138.6
(-3) 		172.7
(-1.9) 		189
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 135.9
(3)
P 		45.8
(-2.1)
A 		32.7
(-2.9)
P 		30.4
(-3)
P 		106
B 134.6
(3)
P 		33.2
(-2.6)
A 		25.3
(-3)
A 		45.8
(-1.9)
P 		109
C 133.1
(3)
P 		61.5
(-1.3)
P 		51.9
(-1.8)
P 		32.4
(-3)
P 		101
avr 134.5
(3) 		46.8
(-2.4) 		36.6
(-3) 		36.2
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 64.5
(1.3)
P 		78.2
(3)
P 		29
(-3)
P 		33.9
(-2.4)
M 		46.8
(-0.8)
A 		52.3
(-0.2)
P 		49
B 103.4
(3)
P 		68.4
(-0.3)
P 		40.3
(-3)
P 		48.7
(-2.2)
P 		52
(-1.9)
P 		67.7
(-0.4)
P 		63
C 124.5
(3)
P 		79
(-0)
P 		38.6
(-2.7)
P 		34.7
(-3)
P 		43
(-2.4)
P 		40.8
(-2.6)
P 		90
avr 97.5
(3) 		75.2
(0.8) 		36
(-3) 		39.1
(-2.7) 		47.3
(-1.9) 		53.6
(-1.3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192574_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17417
Sequence Type Exemplar sequence
Representative Public ID C27C12.2 NCBI
Target Description C27C12.2 /REP_DB=WormBase Gene ID /WP=CE20531 /TR=Q18250 /GB=CAA93744.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078061 NCBI Caenorhabditis elegans C27C12.2 (C27C12.2) mRNA, complete cds. 11/11 None
SNAP00000037255 ENSEMBL cdna:SNAP chromosome:CEL140:X:14845862:14848451:1 11/11 None
GENEFINDER00000037266 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14845862:14848800:1 9/11 None
C27C12.2 ENSEMBL cdna:known chromosome:CEL140:X:14845855:14849111:1 gene:C27C12.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14845861-14848411(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (3 domains)
Ensembl C27C12.2
Entrez Gene 181580 Entrez gene
SwissProt Q18250 EMBL-EBI
WormBase CE20531 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93744 Hypothetical protein C27C12.2 [Caenorhabditis elegans] ref|NP_510462.1| C27C12.2 [Caenorhabditis elegans] 0.0
blast CAE63237 Hypothetical protein CBG07600 [Caenorhabditis briggsae] 1.0E-152
blast CAE63237 Hypothetical protein CBG07600 [Caenorhabditis briggsae] 1.0E-143
blast CAE69255 Hypothetical protein CBG15303 [Caenorhabditis briggsae] 1.0E-136
blast CAE69255 Hypothetical protein CBG15303 [Caenorhabditis briggsae] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.6E-8
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.2E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.2E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.6E-8
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.2E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.2E-5
Sequence
Target Sequence 
>C. ELEGANS:192574_S_AT
aaacgagcatccacaatccaactctcgaccgtctaccgtaatcccacgagtacagaggac
caacacgtcagcgagcctcacaagatctatggatcattcatcaatgtcgccaatttctgc
gcatgatgacccgtattccaattcagcaagctattctagctctcgactcatacgtcattt
tcacagcgctagcttggcacatttcgagccaaaaaccgagccaatggatgactacagcta
caacttctcagataatgacttcaattcctttgagttttcatccacttctgaagagctaaa
gaatattggctgccaaaaaatgaagtcctcaaagatgcctctccaagacagaccgtacaa
gtgtccacgagatggatgtgacaggaggttctcgagaagtgacgagctgacgagacatat
taggattcatacaggccaaaagccattccagtgccgaatttgtatgcgtgccttctcccg
ctcggaccatttgacgacccacgtgcgcactcacactggcgaaaaaccattctcctgtga
catttgtggccggaaattcgcgcgaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGAGCATCCACAATCCAACTCT 436 125 774 Antisense
GTCTACCGTAATCCCACGAGTACAG 516 467 804 Antisense
GTACAGAGGACCAACACGTCAGCGA 647 459 823 Antisense
ACGTCAGCGAGCCTCACAAGATCTA 243 95 838 Antisense
CATTCATCAATGTCGCCAATTTCTG 234 217 868 Antisense
GCCAATTTCTGCGCATGATGACCCG 110 277 882 Antisense
TGATGACCCGTATTCCAATTCAGCA 295 567 897 Antisense
AGCAAGCTATTCTAGCTCTCGACTC 145 77 918 Antisense
AGCTCTCGACTCATACGTCATTTTC 406 79 931 Antisense
ATTCTCCTGTGACATTTGTGGCCGG 665 9 1302 Antisense
TTGTGGCCGGAAATTCGCGCGAAGT 531 707 1317 Antisense
Sequence Source Affymetrix Proprietary Database