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[192573_at] Human ARNT-interacting protein like

Description C15C8.2 /REP_DB=WormBase Gene ID /WP=CE05286 /TR=Q18018 /GB=CAA99775.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human ARNT-interacting protein like
Cluster 6grp_high1_10_10 > 14      6grp_total > 04      4grp_total > 50      6grp_cgc > 41      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 123.9
(-2.3)
A 		385.5
(3)
P 		280.1
(0.9)
P 		87
(-3)
A 		299
B 106.9
(-3)
A 		356
(3)
P 		236.1
(0.1)
P 		114.9
(-2.8)
A 		249
C 104.5
(-3)
A 		350.3
(3)
P 		198.2
(-0.7)
P 		114.1
(-2.8)
A 		246
avr 111.8
(-2.8) 		363.9
(3) 		238.1
(0.1) 		105.3
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 278.9
(3)
P 		229.1
(0.8)
P 		167.3
(-1.9)
P 		223.5
(0.5)
P 		193.9
(-0.8)
P 		143.6
(-3)
A 		135
B 305.1
(3)
P 		261
(1.6)
P 		114.9
(-3)
P 		187.2
(-0.7)
P 		154.7
(-1.7)
P 		118.9
(-2.9)
P 		190
C 250.2
(1.5)
M 		301.5
(3)
P 		224.3
(0.8)
P 		205.7
(0.2)
P 		157.5
(-1.2)
P 		94.9
(-3)
P 		207
avr 278.1
(3) 		263.9
(2.5) 		168.8
(-1.1) 		205.5
(0.3) 		168.7
(-1.1) 		119.1
(-3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 45.1
(-0.3)
A 		83.7
(3)
P 		73.2
(2.1)
P 		12.7
(-3)
A 		71
B 34.1
(-2.1)
A 		87.9
(3)
P 		54.7
(-0.1)
P 		24.5
(-3)
A 		63
C 34.6
(-1.9)
A 		100.7
(3)
P 		69.1
(0.7)
P 		19.2
(-3)
A 		82
avr 37.9
(-1.4) 		90.8
(3) 		65.7
(0.9) 		18.8
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 51.4
(-0.9)
P 		81.5
(3)
P 		36.4
(-2.8)
P 		56.7
(-0.2)
P 		58.5
(0)
P 		35
(-3)
A 		47
B 106.2
(3)
P 		86.9
(1.5)
P 		27.9
(-3)
P 		49.6
(-1.3)
P 		62.8
(-0.3)
P 		44.3
(-1.7)
P 		78
C 92.7
(3)
M 		92
(2.9)
P 		57.1
(-0.5)
P 		41.4
(-2.1)
P 		51
(-1.1)
P 		31.8
(-3)
P 		61
avr 83.4
(2.6) 		86.8
(3) 		40.5
(-2.6) 		49.2
(-1.5) 		57.4
(-0.5) 		37
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192573_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14302
Sequence Type Exemplar sequence
Representative Public ID C15C8.2 NCBI
Target Description C15C8.2 /REP_DB=WormBase Gene ID /WP=CE05286 /TR=Q18018 /GB=CAA99775.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human ARNT-interacting protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073783(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073783 NCBI Caenorhabditis elegans CKY homolog family member (cky-1) (cky-1) mRNA, complete cds. 9/11 None
SNAP00000030241 ENSEMBL cdna:SNAP chromosome:CEL140:V:12739341:12743574:1 11/11 None
GENEFINDER00000030254 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12739341:12743574:1 11/11 None
C15C8.2 ENSEMBL cdna:known chromosome:CEL140:V:12739293:12743574:1 gene:C15C8.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12739340-12743574(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human ARNT-interacting protein like
Gene Symbol cky-1
Ensembl C15C8.2
Entrez Gene 179743 Entrez gene
SwissProt Q18018 EMBL-EBI
WormBase CE30427 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99775 Hypothetical protein C15C8.2 [Caenorhabditis elegans] ref|NP_506184.2| CKY homolog family member (cky-1) [Caenorhabditis elegans] gb|AAK52514.1| putative transcription factor C15C8.2 [Caenorhabditis elegans] 0.0
blast CAE63982 Hypothetical protein CBG08574 [Caenorhabditis briggsae] 0.0
blast EAL28305 GA16931-PA [Drosophila pseudoobscura] 1.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR000014 EMBL-EBI PAS domain 5.7E-5
Sequence
Target Sequence 
>C. ELEGANS:192573_AT
caggaatcgcaccaggttttccgtcattggattacaatcagataaaagtggaaattccaa
tgcgtccaatcaatactcaaattccattatttacccccgagtcatcatcaccggagagtt
ctgcatcccttcatacatctttacttcctcatcataatgcattcccattagacattcttg
aagacattttaccttcaaatgacgtgctcccagagcttaaagatgaagtggacgaaattc
ttcggcaagttgagcaatctccagcaacatccccagctcattcatttccttcaaatgtta
attttggtcatcgtcattctatgccaaatgcatttgattccgccgaattgtacaaatatc
taggaccagcactatttgatggaaattttgcaatgcaacatcaacaccacctccaacaac
agcatcaatcccaaccgaatcatcctcttcaaatgactccaattcctcccatgtcatgtc
ctccatcaaattacggacaatcaaactttctattccatcatcaacatctcaatcaacacc
tacatcattcccaacctccgcatccttaccattttgattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGAATCGCACCAGGTTTTCCGTC 204 209 1346 Antisense
ATTCCAATGCGTCCAATCAATACTC 549 5 1399 Antisense
TCAAATTCCATTATTTACCCCCGAG 225 627 1422 Antisense
GAGTCATCATCACCGGAGAGTTCTG 101 401 1444 Antisense
ACTTCCTCATCATAATGCATTCCCA 587 103 1488 Antisense
TACCTTCAAATGACGTGCTCCCAGA 210 651 1535 Antisense
GTTGAGCAATCTCCAGCAACATCCC 485 437 1594 Antisense
TGGTCATCGTCATTCTATGCCAAAT 612 551 1650 Antisense
CATGTCATGTCCTCCATCAAATTAC 234 209 1815 Antisense
TCAACATCTCAATCAACACCTACAT 455 629 1866 Antisense
TCCGCATCCTTACCATTTTGATTAT 112 597 1902 Antisense
Sequence Source Affymetrix Proprietary Database