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[192572_at] testis-specific protein TPX-1 like

Description F49E11.4 /REP_DB=WormBase Gene ID /WP=CE10800 /TR=Q93747 /GB=CAA94351.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_total > 09      4grp_total > 27      6grp_cgc > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 13.6
(-1.6)
A 		4.1
(-3)
A 		6.6
(-2.6)
A 		44.2
(3)
A 		40
B 15.2
(2.1)
A 		17.4
(3)
A 		6.6
(-1.3)
A 		2.5
(-3)
A 		15
C 3.6
(-3)
A 		42.1
(2.7)
A 		5.5
(-2.7)
A 		44.2
(3)
A 		41
avr 10.8
(-1.9) 		21.2
(0.7) 		6.2
(-3) 		30.3
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.9
(-1.1)
A 		2.7
(-2.8)
A 		21.2
(3)
A 		2.1
(-2.9)
A 		4.6
(-2.2)
A 		1.9
(-3)
A 		19
B 21.2
(3)
A 		4.9
(-3)
A 		6.3
(-2.5)
A 		10.9
(-0.8)
A 		17.2
(1.5)
A 		18.8
(2.1)
A 		16
C 11.4
(3)
A 		5.4
(-1)
A 		4
(-1.9)
A 		4.6
(-1.5)
A 		2.4
(-3)
A 		6.4
(-0.3)
A 		9
avr 13.5
(3) 		4.3
(-3) 		10.5
(1) 		5.9
(-2) 		8.1
(-0.5) 		9
(0.1) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.9
(1.3)
A 		0.9
(-3)
A 		1.7
(-2.1)
A 		6.5
(3)
A 		6
B 4.8
(3)
A 		4.3
(2.3)
A 		1.5
(-1.6)
A 		0.5
(-3)
A 		4
C 1.2
(-3)
A 		12.1
(3)
A 		1.9
(-2.6)
A 		7.5
(0.5)
A 		11
avr 3.6
(-0.2) 		5.8
(3) 		1.7
(-3) 		4.8
(1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.5
(-1.5)
A 		1
(-2.3)
A 		4.6
(3)
A 		0.5
(-3)
A 		1.4
(-1.7)
A 		0.5
(-3)
A 		4
B 7.4
(3)
A 		1.6
(-2.9)
A 		1.5
(-3)
A 		2.9
(-1.6)
A 		7
(2.6)
A 		7
(2.6)
A 		6
C 4.2
(3)
A 		1.7
(-1.4)
A 		1
(-2.6)
A 		0.9
(-2.8)
A 		0.8
(-3)
A 		2.1
(-0.7)
A 		3
avr 4.4
(3) 		1.4
(-3) 		2.4
(-1) 		1.4
(-3) 		3.1
(0.4) 		3.2
(0.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9096
Sequence Type Exemplar sequence
Representative Public ID F49E11.4 NCBI
Target Description F49E11.4 /REP_DB=WormBase Gene ID /WP=CE10800 /TR=Q93747 /GB=CAA94351.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070096(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070096 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-254) (tag-254) mRNA, complete cds. 11/11 None
SNAP00000011570 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13047098:13048193:1 11/11 None
GENEFINDER00000011579 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13047167:13048193:1 11/11 None
F49E11.4 ENSEMBL cdna:known chromosome:CEL140:IV:13047167:13048193:1 gene:F49E11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13047172-13048199(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Gene Symbol tag-254
Ensembl F49E11.4
Entrez Gene 186048 Entrez gene
SwissProt Q93747 EMBL-EBI
WormBase CE10800 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94351 Hypothetical protein F49E11.4 [Caenorhabditis elegans] ref|NP_502497.1| Temporarily Assigned Gene name family member (tag-254) [Caenorhabditis elegans] 1.0E-125
blast CAE56329 Hypothetical protein CBG23994 [Caenorhabditis briggsae] 1.0E-92
blast CAE56329 Hypothetical protein CBG23994 [Caenorhabditis briggsae] 2.0E-92
blast CAE56328 Hypothetical protein CBG23993 [Caenorhabditis briggsae] 2.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 5.2E-45
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 5.2E-45
Sequence
Target Sequence 
>C. ELEGANS:192572_AT
tctacttctttttgcttcggcaattggtgtttggagtgataacttctcgaaagagggaca
actcaatctgctaaatgtgcacaatgaattccgttcacagctagctctcggtcagctttc
cttccgtggagtcaagaagccatcggctagtatgatgcgaaaaatttcctggagtaaaaa
actaacaaatgccgcgacaaagtttgcagagacctgtccgaaaaatcattccgtggttat
gaatacaggagagagcatcttttggcacttttctagctctttgagcactccggagcaata
tgcaaccctggcccctcaaaaatggtggaatgaattcgaaaccaatggatgggactcgtt
gatctacaaccacgcatctcaacgtttccaaatcgggcatgcagttcaaatggcatggca
cacgacaagcaaagtgggatgtgggtactcgaaatgtgcagttggaactcctgaacagac
aatggtggtggtttgtagatactttcaaaagggaaacatcgaaggagaaccgatttacaa
tgagggagaaacgtgcaccaaatgcccagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACTTCTTTTTGCTTCGGCAATT 580 613 27 Antisense
GAGGGACAACTCAATCTGCTAAATG 3 403 79 Antisense
ATGAATTCCGTTCACAGCTAGCTCT 361 43 110 Antisense
AGCTTTCCTTCCGTGGAGTCAAGAA 363 77 140 Antisense
GAGACCTGTCCGAAAAATCATTCCG 270 395 235 Antisense
GAGAGAGCATCTTTTGGCACTTTTC 561 395 275 Antisense
GGCACTTTTCTAGCTCTTTGAGCAC 502 535 290 Antisense
TCCGGAGCAATATGCAACCCTGGCC 581 593 315 Antisense
GGGACTCGTTGATCTACAACCACGC 166 471 377 Antisense
TCAACGTTTCCAAATCGGGCATGCA 260 627 405 Antisense
GAAACGTGCACCAAATGCCCAGAAG 687 357 574 Antisense
Sequence Source Affymetrix Proprietary Database