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[192569_at]

Description F08B4.2 /REP_DB=WormBase Gene ID /WP=CE07043 /TR=Q19194 /GB=AAB37728.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=cadherin repeat-containing protein
Cluster 6grp_total > 99      4grp_total > 43      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 10.6
(-2.2)
A 		48.7
(3)
A 		4.7
(-3)
A 		11
(-2.1)
A 		44
B 19.4
(1.6)
A 		22.3
(3)
A 		9.7
(-3)
A 		15.3
(-0.3)
A 		13
C 6.8
(-1.6)
A 		11.7
(3)
A 		9.4
(0.8)
A 		5.3
(-3)
A 		6
avr 12.3
(-1.7) 		27.6
(3) 		7.9
(-3) 		10.5
(-2.2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 29.1
(-2.6)
A 		10.3
(-3)
A 		10.2
(-3)
A 		59.9
(-2)
A 		175.4
(0.5)
A 		295.4
(3)
P 		285
B 14.5
(-2.9)
A 		9.8
(-3)
A 		11.2
(-3)
A 		11.3
(-3)
A 		241.5
(2.9)
M 		246.9
(3)
P 		237
C 6.5
(-3)
A 		24.7
(-2.6)
A 		32.7
(-2.4)
A 		6.2
(-3)
A 		267.7
(3)
M 		244.9
(2.5)
P 		262
avr 16.7
(-3) 		14.9
(-3) 		18
(-2.9) 		25.8
(-2.7) 		228.2
(2.2) 		262.4
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.9
(-1.3)
A 		10.6
(3)
A 		1.2
(-3)
A 		1.6
(-2.7)
A 		9
B 6.2
(3)
A 		5.5
(2)
A 		2.2
(-3)
A 		3.3
(-1.4)
A 		4
C 2.2
(0.1)
A 		3.4
(3)
A 		3.3
(2.8)
A 		0.9
(-3)
A 		3
avr 4.1
(-0.1) 		6.5
(3) 		2.2
(-2.6) 		1.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 5.4
(-2.7)
A 		3.7
(-2.9)
A 		2.2
(-3)
A 		15.2
(-1.9)
A 		52.9
(1.4)
A 		71.9
(3)
P 		70
B 5.1
(-2.8)
A 		3.3
(-3)
A 		2.7
(-3)
A 		3
(-3)
A 		98.1
(3)
M 		92.1
(2.6)
P 		95
C 2.4
(-2.9)
A 		7.5
(-2.6)
A 		8.3
(-2.5)
A 		1.3
(-3)
A 		86.6
(3)
M 		82
(2.7)
P 		85
avr 4.3
(-3) 		4.8
(-3) 		4.4
(-3) 		6.5
(-2.8) 		79.2
(2.8) 		82
(3) 		78
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8824
Sequence Type Exemplar sequence
Representative Public ID F08B4.2 NCBI
Target Description F08B4.2 /REP_DB=WormBase Gene ID /WP=CE07043 /TR=Q19194 /GB=AAB37728.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=cadherin repeat-containing protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069085(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069085 NCBI Caenorhabditis elegans CaDHerin family member (cdh-5) (cdh-5) mRNA, complete cds. 11/11 None
F08B4.2a ENSEMBL cdna:known chromosome:CEL140:IV:8669124:8677956:1 gene:F08B4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069086 3/11 Cross Hyb Matching Probes None
SNAP00000041283 3/11 Cross Hyb Matching Probes None
SNAP00000041284 7/11 Cross Hyb Matching Probes None
GENEFINDER00000041293 7/11 Cross Hyb Matching Probes None
GENEFINDER00000041294 3/11 Cross Hyb Matching Probes None
F08B4.2b 3/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177671 2 1 NM_069085 192569_at (11)
NM_069086 174613_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8669129-8677962(+) 100.0 100.0
Public Domain and Genome References
Ensembl F08B4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37728 Cadherin family protein 5, isoform a [Caenorhabditis elegans] ref|NP_501486.1| CaDHerin family member (cdh-5) [Caenorhabditis elegans] 0.0
blast CAE56701 Hypothetical protein CBG24486 [Caenorhabditis briggsae] 0.0
blast AAL02476 Cadherin family protein 5, isoform b [Caenorhabditis elegans] ref|NP_501487.1| CaDHerin family member (cdh-5) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002126 EMBL-EBI Cadherin 7.5E-10
Pfam IPR002126 EMBL-EBI Cadherin 5.2E-8
Pfam IPR002126 EMBL-EBI Cadherin 3.1E-8
Pfam IPR002126 EMBL-EBI Cadherin 1.4E-18
Pfam IPR002126 EMBL-EBI Cadherin 1.1E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501486.1 1 1271-1293
F08B4.2a 1 1271-1293
Sequence
Target Sequence 
>C. ELEGANS:192569_AT
attggagtaccagctcatcagcgaatgacattgatgggtgcaggaggtggtcctggaatg
ggaggacctggtggaccacaaaatggtcaaggaaatcaaagttatagaacatatggatac
agacctgcacatagtacagcgtatgaaggagacttcagcatagaagaatcaatgtatgcc
ataaacccatcaggacgattggatcctattacgaattctcacttgaacaacaactcgact
aaccgtctccactcttcacttgcacaaatcttcatgcaaccaatcaacgtcatgctcgct
gttcttctcgccttggcttcatttgctcaaggaggcagatctgttgctccggctggtgca
gtcactgaaccaacagttactcaagctgttccagaaggatcaggacttagttcagatgtc
actgatcgtccaaacatcgactccactgatgttgtatcaaatgcaacttcggtggaagat
ttgcttggaagttcaacaaatgcaaacaacactggtacattcaactctagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGAGTACCAGCTCATCAGCGAA 679 3 4072 Antisense
GAATGGGAGGACCTGGTGGACCACA 626 331 4127 Antisense
GTATGCCATAAACCCATCAGGACGA 689 453 4245 Antisense
GGATCCTATTACGAATTCTCACTTG 463 513 4272 Antisense
GAACAACAACTCGACTAACCGTCTC 153 353 4296 Antisense
CCACTCTTCACTTGCACAAATCTTC 338 275 4320 Antisense
GCAACCAATCAACGTCATGCTCGCT 175 321 4347 Antisense
AGGAGGCAGATCTGTTGCTCCGGCT 57 57 4401 Antisense
TCCGGCTGGTGCAGTCACTGAACCA 211 595 4419 Antisense
CACTGATCGTCCAAACATCGACTCC 11 197 4491 Antisense
AACACTGGTACATTCAACTCTAGGA 245 133 4579 Antisense
Sequence Source Affymetrix Proprietary Database