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[192568_at] IG-like C2-type domains

Description C09C7.1 /REP_DB=WormBase Gene ID /WP=CE02468 /GEN=zig-4 /TR=Q17858 /GB=AAA68768.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=IG-like C2-type domains
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 28      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_highest_nonorm > 80      6grp_total > 19      4grp_total > 34      6grp_highest_sub > Cu      6grp_cgc > 01      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 267.2
(-3)
P 		418.5
(3)
P 		328.1
(-0.6)
P 		414.2
(2.8)
P 		151
B 290.9
(-1.3)
P 		468.6
(3)
P 		218.9
(-3)
P 		320.1
(-0.6)
P 		250
C 236.2
(-3)
P 		351.7
(3)
P 		318.9
(1.3)
P 		322
(1.5)
P 		116
avr 264.8
(-3) 		412.9
(3) 		288.6
(-2) 		352.1
(0.5) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 354.8
(3)
P 		253
(-0.4)
P 		177.1
(-3)
P 		262.1
(-0.1)
P 		184.4
(-2.8)
P 		251.4
(-0.5)
P 		178
B 317.2
(3)
P 		148.9
(-2.6)
P 		206.9
(-0.7)
P 		136.7
(-3)
P 		272.6
(1.5)
P 		193.2
(-1.1)
P 		181
C 410.9
(3)
P 		238.1
(-1.1)
P 		222.4
(-1.4)
P 		156.2
(-3)
P 		249.7
(-0.8)
P 		172.7
(-2.6)
P 		255
avr 361
(3) 		213.3
(-2) 		202.1
(-2.4) 		185
(-3) 		235.6
(-1.3) 		205.8
(-2.3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 97.3
(3)
P 		90.8
(1.9)
P 		85.8
(1.1)
P 		60.6
(-3)
P 		37
B 92.8
(0.9)
P 		115.7
(3)
P 		50.7
(-3)
P 		68.2
(-1.4)
P 		65
C 78.2
(-0.5)
P 		101.1
(1.9)
P 		111.2
(3)
P 		54.3
(-3)
P 		57
avr 89.4
(1.1) 		102.5
(3) 		82.6
(0.1) 		61
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 65.4
(0.1)
P 		90
(3)
P 		38.6
(-3)
P 		66.5
(0.3)
P 		55.6
(-1)
P 		61.2
(-0.4)
P 		51
B 110.4
(3)
P 		49.6
(-1.9)
P 		50.2
(-1.9)
P 		36.2
(-3)
P 		110.8
(3)
P 		72
(-0.1)
P 		75
C 152.3
(3)
P 		72.6
(-1)
P 		56.6
(-1.7)
P 		31.4
(-3)
P 		80.8
(-0.5)
P 		57.8
(-1.7)
P 		121
avr 109.4
(3) 		70.7
(-0.6) 		48.5
(-2.6) 		44.7
(-3) 		82.4
(0.5) 		63.7
(-1.2) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16574
Sequence Type Exemplar sequence
Representative Public ID C09C7.1 NCBI
Target Description C09C7.1 /REP_DB=WormBase Gene ID /WP=CE02468 /GEN=zig-4 /TR=Q17858 /GB=AAA68768.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=IG-like C2-type domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076934 NCBI Caenorhabditis elegans 2 (Zwei) IG-domain protein family member (zig-4) (zig-4) mRNA, complete cds. 11/11 None
SNAP00000001420 ENSEMBL cdna:SNAP chromosome:CEL140:X:7925411:7926295:1 11/11 None
GENEFINDER00000001421 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7925553:7926295:1 11/11 None
C09C7.1 ENSEMBL cdna:known chromosome:CEL140:X:7925411:7926461:1 gene:C09C7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7925409-7926294(+) 100.0 100.0
Public Domain and Genome References
Gene Title IG-like C2-type domains
Gene Symbol zig-4
Ensembl C09C7.1
Entrez Gene 181051 Entrez gene
SwissProt Q17858 EMBL-EBI
WormBase CE02468 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68768 2 (zwei) ig-domain protein protein 4 [Caenorhabditis elegans] ref|NP_509335.1| 2 (Zwei) IG-domain protein family member (zig-4) [Caenorhabditis elegans] gb|AAL59609.1| secreted 2-immunoglobulin-domain protein ZIG-4 [Caenorhabditis elegans] 1.0E-144
blast AAA68768 2 (zwei) ig-domain protein protein 4 [Caenorhabditis elegans] ref|NP_509335.1| 2 (Zwei) IG-domain protein family member (zig-4) [Caenorhabditis elegans] gb|AAL59609.1| secreted 2-immunoglobulin-domain protein ZIG-4 [Caenorhabditis elegans] 1.0E-131
blast CAE70321 Hypothetical protein CBG16849 [Caenorhabditis briggsae] 8.0E-67
blast CAE70321 Hypothetical protein CBG16849 [Caenorhabditis briggsae] 4.0E-65
blast CAE63027 Hypothetical protein CBG07284 [Caenorhabditis briggsae] 9.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.2E-7
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.2E-4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 6.2E-7
Sequence
Target Sequence 
>C. ELEGANS:192568_AT
tggaaagcgcgctgattcctggaggagaaacatatcaattgcgatgtgatataatgtcca
ctcctgctgctaccattcattggaagttcaatggaaagttgatccagggaagtaatgaat
tgaatgtcgaagagaagttgctgaactttggaaaagcaattgttgacactggaattgttg
cctccatactcaccatccagtgcccatcagctgaaaactcaggaacatacagttgtgtcg
gatacaatggacatcaaacaatagaaacggttgccgaagtcgaaattgaaggagaagctt
cggggtgtagatcaaatcacaaatccgcacctgaaattgttttctggactgattctcgtt
ttgagatgactggaaacgtggccacccttgtctgccgcgcaaatcagcaagtcgactggg
tatggatgtccaacgatgagcttgtaaagaacaatgacaagttcacggttctttcaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAAGCGCGCTGATTCCTGGAGG 530 545 167 Antisense
TGTGATATAATGTCCACTCCTGCTG 261 555 211 Antisense
CTGGAATTGTTGCCTCCATACTCAC 84 241 335 Antisense
ATCCAGTGCCCATCAGCTGAAAACT 698 39 361 Antisense
GGAGAAGCTTCGGGGTGTAGATCAA 659 517 457 Antisense
CAAATCCGCACCTGAAATTGTTTTC 204 193 486 Antisense
TTTCTGGACTGATTCTCGTTTTGAG 195 669 507 Antisense
AGATGACTGGAAACGTGGCCACCCT 668 67 530 Antisense
TGTCTGCCGCGCAAATCAGCAAGTC 219 559 555 Antisense
GTCGACTGGGTATGGATGTCCAACG 160 475 577 Antisense
GACAAGTTCACGGTTCTTTCAAATG 401 365 622 Antisense
Sequence Source Affymetrix Proprietary Database