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[192567_at]

Description F11A10.2 /REP_DB=WormBase Gene ID /WP=CE03183 /TR=Q19335 /GB=CAA92593.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=splicosome-associated protein like
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 76      6grp_total > 90      4grp_total > 11      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 729
1 2 3 4 range
A 1235.6
(-1.8)
P 		1289.1
(-1.2)
P 		1124.6
(-3)
P 		1676
(3)
P 		551
B 1259.6
(-2.2)
P 		1203.2
(-2.7)
P 		1166.1
(-3)
P 		1854
(3)
P 		688
C 1158.4
(-3)
P 		1175.1
(-2.8)
P 		1186.3
(-2.6)
P 		1615.2
(3)
P 		457
avr 1217.9
(-2.4) 		1222.5
(-2.3) 		1159
(-3) 		1715.1
(3) 		556

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 733
1 2 3 4 5 6 range
A 1555.5
(3)
P 		852.3
(-3)
P 		974.7
(-2)
P 		1256.2
(0.4)
P 		1044.3
(-1.4)
P 		1040.8
(-1.4)
P 		703
B 1033.2
(-1.7)
P 		956.6
(-3)
P 		1008
(-2.1)
P 		1159.2
(0.4)
P 		1138.8
(0.1)
P 		1314.3
(3)
P 		358
C 911
(-1.5)
P 		1049.8
(0.8)
P 		940.7
(-1)
P 		1181.8
(3)
P 		822.4
(-3)
P 		1083
(1.4)
P 		359
avr 1166.6
(2.2) 		952.9
(-3) 		974.5
(-2.5) 		1199.1
(3) 		1001.8
(-1.8) 		1146
(1.7) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 449.9
(3)
P 		279.8
(-2)
P 		294
(-1.6)
P 		245.3
(-3)
P 		205
B 401.7
(3)
P 		297.2
(-1.8)
P 		270.2
(-3)
P 		395.1
(2.7)
P 		132
C 383.5
(1.7)
P 		337.9
(-0.2)
P 		413.5
(3)
P 		272.3
(-3)
P 		141
avr 411.7
(3) 		305
(-3) 		325.9
(-1.8) 		304.2
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 286.7
(1.2)
P 		303.1
(2.1)
P 		212.3
(-3)
P 		318.6
(3)
P 		315.1
(2.8)
P 		253.4
(-0.7)
P 		106
B 359.5
(-0.2)
P 		318.4
(-1.2)
P 		244.8
(-3)
P 		307
(-1.5)
P 		462.7
(2.3)
P 		490.1
(3)
P 		245
C 337.7
(1.8)
P 		320.3
(1)
P 		239.4
(-2.9)
P 		237.7
(-3)
P 		266.1
(-1.6)
P 		362.6
(3)
P 		125
avr 328
(1.2) 		313.9
(0.6) 		232.2
(-3) 		287.8
(-0.6) 		348
(2.1) 		368.7
(3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10274
Sequence Type Exemplar sequence
Representative Public ID F11A10.2 NCBI
Target Description F11A10.2 /REP_DB=WormBase Gene ID /WP=CE03183 /TR=Q19335 /GB=CAA92593.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=splicosome-associated protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069890(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069890 NCBI Caenorhabditis elegans F11A10.7 (F11A10.7) mRNA, complete cds. 11/11 None
SNAP00000006202 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12085393:12086911:1 11/11 None
GENEFINDER00000006212 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12085393:12086911:1 11/11 None
F11A10.7 ENSEMBL cdna:known chromosome:CEL140:IV:12085393:12086927:1 gene:F11A10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12084453-12086544(+) 95.85 100.0
Public Domain and Genome References
Gene Title
Ensembl F11A10.7
Entrez Gene 178148 Entrez gene
SwissProt Q95QL3 EMBL-EBI
WormBase CE28911 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:248869_AT RNA recognition motif (RRM)-containing protein at
CANINE:1604090_AT similar to RNA binding motif protein 34 cfa
CANINE_2:CFA.20325.1.S1_S_AT similar to RNA binding motif protein 34 cfa
CANINE_2:CFA.2425.1.S1_S_AT similar to RNA binding motif protein 34 cfa
HG-U133_PLUS_2:214942_AT RNA binding motif protein 34 hs
HG-U133A_2:214942_AT RNA binding motif protein 34 hs
HG-U133A:214942_AT RNA binding motif protein 34 hs
HG-U95AV2:33233_AT RNA binding motif protein 34 hs
HUGENEFL:D38491_AT RNA binding motif protein 34 hs
U133_X3P:HS.322478.0.S1_3P_AT RNA binding motif protein 34 hs
U133_X3P:HS.17428.2.S1_3P_S_AT RNA binding motif protein 34 hs
HG-U133A_2:212591_AT RNA binding motif protein 34 hs
HG-U133_PLUS_2:212591_AT RNA binding motif protein 34 hs
HG-U133A:212591_AT RNA binding motif protein 34 hs
HG-U133A_2:214943_S_AT RNA binding motif protein 34 hs
HG-U133_PLUS_2:214943_S_AT RNA binding motif protein 34 hs
HG-U133A:214943_S_AT RNA binding motif protein 34 hs
HG-U95AV2:33234_AT RNA binding motif protein 34 hs
MG-U74BV2:114739_AT RNA binding motif protein 34 mm
MG-U74BV2:162710_AT RNA binding motif protein 34 mm
MOE430B:1429587_AT RNA binding motif protein 34 mm
MOUSE430_2:1429587_AT RNA binding motif protein 34 mm
MOE430B:1436595_AT RNA binding motif protein 34 mm
MOUSE430_2:1436595_AT RNA binding motif protein 34 mm
MU19KSUBB:TC32079_AT MKIAA0117 protein mm
MU19KSUBB:TC32961_AT MKIAA0117 protein mm
MU19KSUBC:TC38487_AT MKIAA0117 protein mm
RG-U34B:RC_AI007656_AT similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted) rn
RG-U34C:RC_AI073196_AT similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted) rn
RAE230A:1389065_AT similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted) rn
RAT230_2:1389065_AT similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted) rn
RAE230B:1385199_A_AT similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted) rn
RAT230_2:1385199_A_AT similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted) rn
RAE230B:1393749_AT similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted) rn
RAT230_2:1393749_AT similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted) rn
RAE230B:1379086_AT Similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted) rn
RAT230_2:1379086_AT Similar to DNA segment, Chr 8, ERATO Doi 233, expressed (predicted) rn
YEAST_2:1773340_AT Nucleolar protein, required for pre-25S rRNA processing; contains an RNA recognition motif (RRM) and has similarity to Nop13p, Nsr1p, and putative orthologs in Drosophila and S. pombe Sc
Protein Similarities
Method ID Description E-Value
blast CAC70081 Hypothetical protein F11A10.7 [Caenorhabditis elegans] ref|NP_502291.1| F11A10.7 [Caenorhabditis elegans] 1.0E-164
blast CAC70081 Hypothetical protein F11A10.7 [Caenorhabditis elegans] ref|NP_502291.1| F11A10.7 [Caenorhabditis elegans] 1.0E-159
blast CAE62177 Hypothetical protein CBG06224 [Caenorhabditis briggsae] 1.0E-122
blast CAE62177 Hypothetical protein CBG06224 [Caenorhabditis briggsae] 1.0E-116
blast XP_394565 PREDICTED: hypothetical protein XP_394565 [Apis mellifera] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.1E-13
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:192567_AT
gagaaatctgcttcctgcgaatgagaaattgacgaaacgagtcactcatttgacaggaaa
attgaatgacaaacagagttctctcacgttctatgtgaaattcggagcagaagaatcagt
ggagaaagctctgaagtacaatggaaccaagctggacgatcatgtgattcgtgttgacaa
agttggaagtaagaagaaagaatttggaaaggatatggccatttttgttggaaacttgcc
gttcgagattaccgaagatgctctcattacttttttctctgcacaaatcggacctgtcga
ggctgtcagaattgtcagagataaagatactggaaagggaaaaggattcgcgtttgtcaa
tttcaaacaagattcttctgtgagtcttgcattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAATCTGCTTCCTGCGAATGAG 390 393 1221 Antisense
GAAACGAGTCACTCATTTGACAGGA 630 357 1254 Antisense
AACAGAGTTCTCTCACGTTCTATGT 66 137 1292 Antisense
GAACCAAGCTGGACGATCATGTGAT 617 345 1364 Antisense
GGAAACTTGCCGTTCGAGATTACCG 40 529 1450 Antisense
GATTACCGAAGATGCTCTCATTACT 96 429 1467 Antisense
TGCTCTCATTACTTTTTTCTCTGCA 461 581 1479 Antisense
TTTTCTCTGCACAAATCGGACCTGT 665 675 1493 Antisense
TCGGACCTGTCGAGGCTGTCAGAAT 34 607 1508 Antisense
AAAGGATTCGCGTTTGTCAATTTCA 566 119 1561 Antisense
GATTCTTCTGTGAGTCTTGCATTGA 609 431 1591 Antisense
Sequence Source Affymetrix Proprietary Database