[Home] | [Total List]

[192566_s_at] WD domain, G-beta repeat

Description F38A6.2 /REP_DB=WormBase Gene ID /WP=CE15999 /GEN=elp-1 /TR=O45487 /GB=CAB07379.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 72      6grp_total > 90      4grp_total > 31      6grp_highest_sub > 04      6grp_cgc > 96      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 289.8
(2.5)
P 		248.5
(-1.9)
P 		238
(-3)
P 		294.4
(3)
P 		56
B 341.1
(3)
P 		256.5
(-1.5)
P 		270.4
(-0.8)
P 		228.7
(-3)
P 		112
C 328
(2.6)
P 		199.7
(-3)
P 		258.6
(-0.4)
P 		337.3
(3)
P 		138
avr 319.6
(3) 		234.9
(-3) 		255.7
(-1.5) 		286.8
(0.7) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 516.8
(3)
P 		295.2
(-3)
P 		313.5
(-2.5)
P 		496
(2.4)
P 		413.5
(0.2)
P 		412
(0.2)
P 		222
B 367.6
(-0.6)
P 		313.7
(-3)
P 		373.8
(-0.4)
P 		450.3
(3)
P 		352.2
(-1.3)
P 		417.7
(1.6)
P 		137
C 319.1
(-2.8)
P 		361.1
(-0.8)
P 		314.3
(-3)
P 		444.3
(3)
P 		357.6
(-1)
P 		399.2
(0.9)
P 		130
avr 401.2
(0.3) 		323.3
(-3) 		333.9
(-2.5) 		463.5
(3) 		374.4
(-0.8) 		409.6
(0.7) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 105.5
(3)
P 		53.9
(-2)
P 		62.2
(-1.2)
P 		43.1
(-3)
P 		62
B 108.8
(3)
P 		63.4
(-1.5)
P 		62.7
(-1.6)
P 		48.7
(-3)
P 		60
C 108.6
(3)
P 		57.4
(-2.9)
P 		90.1
(0.9)
P 		56.9
(-3)
P 		52
avr 107.6
(3) 		58.2
(-2.1) 		71.7
(-0.7) 		49.6
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 95.3
(-0.2)
P 		105
(0.8)
P 		68.3
(-3)
P 		125.8
(3)
P 		124.8
(2.9)
P 		100.3
(0.3)
P 		58
B 127.9
(0.4)
P 		104.4
(-1.7)
P 		90.8
(-3)
P 		119.3
(-0.4)
P 		143.1
(1.8)
P 		155.8
(3)
P 		65
C 118.3
(1.3)
P 		110.2
(0.4)
P 		80
(-3)
P 		89.4
(-1.9)
P 		115.7
(1)
P 		133.7
(3)
P 		54
avr 113.8
(1.1) 		106.5
(0.2) 		79.7
(-3) 		111.5
(0.8) 		127.9
(2.8) 		129.9
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192566_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14167
Sequence Type Exemplar sequence
Representative Public ID F38A6.2 NCBI
Target Description F38A6.2 /REP_DB=WormBase Gene ID /WP=CE15999 /GEN=elp-1 /TR=O45487 /GB=CAB07379.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075606 NCBI Caenorhabditis elegans Emap-LIKE Protein family member (elp-1) (elp-1) mRNA, complete cds. 11/11 None
SNAP00000022176 ENSEMBL cdna:SNAP chromosome:CEL140:V:20763060:20765737:-1 11/11 None
GENEFINDER00000022181 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20763060:20767195:-1 11/11 None
F38A6.2 ENSEMBL cdna:known chromosome:CEL140:V:20763006:20768212:-1 gene:F38A6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20763059-20768183(-) 99.29 100.0
Public Domain and Genome References
Gene Title WD domain, G-beta repeat
Gene Symbol elp-1
Ensembl F38A6.2
Entrez Gene 180358 Entrez gene
SwissProt O45487 EMBL-EBI
WormBase CE15999 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.10731.1.S1_S_AT similar to Echinoderm microtubule-associated protein-like 4 (EMAP-4) (Restrictedly overexpressed proliferation-associated protein) (Ropp 120) cfa
HG-U133_PLUS_2:232587_AT echinoderm microtubule associated protein like 4 hs
HG-U133B:232587_AT echinoderm microtubule associated protein like 4 hs
HG-U133_PLUS_2:220386_S_AT echinoderm microtubule associated protein like 4 hs
HG-U133A:220386_S_AT echinoderm microtubule associated protein like 4 hs
HG-FOCUS:220386_S_AT echinoderm microtubule associated protein like 4 hs
HG-U133A_2:220386_S_AT echinoderm microtubule associated protein like 4 hs
HG-U133_PLUS_2:223069_S_AT echinoderm microtubule associated protein like 4 hs
HG-U133B:223069_S_AT echinoderm microtubule associated protein like 4 hs
HU35KSUBA:RC_AA180488_AT echinoderm microtubule associated protein like 4 hs
HU35KSUBA:H10549_AT echinoderm microtubule associated protein like 4 hs
HU35KSUBA:AA460047_AT echinoderm microtubule associated protein like 4 hs
HU35KSUBA:AA256438_AT echinoderm microtubule associated protein like 4 hs
HU35KSUBB:RC_T71042_AT echinoderm microtubule associated protein like 4 hs
U133_X3P:G9506630_3P_A_AT echinoderm microtubule associated protein like 4 hs
U133_X3P:G9957235_3P_A_AT echinoderm microtubule associated protein like 4 hs
U133_X3P:HS.13472.1.A2_3P_AT echinoderm microtubule associated protein like 4 hs
U133_X3P:HS.12066.0.S1_3P_AT echinoderm microtubule associated protein like 4 hs
HG-U133B:223068_AT echinoderm microtubule associated protein like 4 hs
HG-U133_PLUS_2:223068_AT echinoderm microtubule associated protein like 4 hs
HG-U133_PLUS_2:228674_S_AT echinoderm microtubule associated protein like 4 hs
HG-U133B:228674_S_AT echinoderm microtubule associated protein like 4 hs
HG-U95B:56562_AT echinoderm microtubule associated protein like 4 hs
HG-U95C:65041_AT echinoderm microtubule associated protein like 4 hs
HG-U95E:88181_AT echinoderm microtubule associated protein like 4 hs
HG-U133_PLUS_2:233940_AT Echinoderm microtubule associated protein like 4 hs
HG-U133B:233940_AT Echinoderm microtubule associated protein like 4 hs
U133_X3P:HS2.147135.1.S1_3P_S_AT Echinoderm microtubule associated protein like 4 hs
U133_X3P:HS.245686.0.S1_3P_AT Echinoderm microtubule associated protein like 4 hs
HG-U133_PLUS_2:1556732_AT Echinoderm microtubule associated protein like 4 hs
HG-U95C:62036_AT Echinoderm microtubule associated protein like 4 hs
HG-U95C:66955_AT Echinoderm microtubule associated protein like 4 hs
HG-U133_PLUS_2:228673_S_AT Echinoderm microtubule associated protein like 4 hs
HG-U133B:228673_S_AT Echinoderm microtubule associated protein like 4 hs
HG-U95E:78412_AT Echinoderm microtubule associated protein like 4 hs
HG-U95E:88182_AT Echinoderm microtubule associated protein like 4 hs
U133_X3P:HS.13472.2.A1_3P_AT Echinoderm microtubule associated protein like 4 hs
MOUSE430_2:1447838_X_AT echinoderm microtubule associated protein like 4 mm
MOE430B:1447838_X_AT echinoderm microtubule associated protein like 4 mm
MG-U74BV2:163106_AT echinoderm microtubule associated protein like 4 mm
MOE430B:1429612_AT echinoderm microtubule associated protein like 4 mm
MOUSE430_2:1429612_AT echinoderm microtubule associated protein like 4 mm
MG-U74BV2:110459_AT echinoderm microtubule associated protein like 4 mm
MG-U74CV2:131633_AT Echinoderm microtubule associated protein like 4, mRNA (cDNA clone MGC:90779 IMAGE:30533573) mm
MU19KSUBA:TC21654_AT Echinoderm microtubule associated protein like 4, mRNA (cDNA clone MGC:90779 IMAGE:30533573) mm
MU19KSUBA:TC21853_AT Echinoderm microtubule associated protein like 4, mRNA (cDNA clone MGC:90779 IMAGE:30533573) mm
MU19KSUBC:TC35086_AT Echinoderm microtubule associated protein like 4, mRNA (cDNA clone MGC:90779 IMAGE:30533573) mm
RAE230B:1397552_AT echinoderm microtubule associated protein like 4 (predicted) rn
RAT230_2:1397552_AT echinoderm microtubule associated protein like 4 (predicted) rn
RAE230A:1376827_AT Echinoderm microtubule associated protein like 4 (predicted) rn
RAT230_2:1376827_AT Echinoderm microtubule associated protein like 4 (predicted) rn
RAE230A:1378016_AT Echinoderm microtubule associated protein like 4 (predicted) rn
RAT230_2:1378016_AT Echinoderm microtubule associated protein like 4 (predicted) rn
RAE230A:1392500_AT Echinoderm microtubule associated protein like 4 (predicted) rn
RAT230_2:1392500_AT Echinoderm microtubule associated protein like 4 (predicted) rn
RG-U34B:RC_AA899923_AT Echinoderm microtubule associated protein like 4 (predicted) rn
RG-U34B:RC_AI009097_AT Echinoderm microtubule associated protein like 4 (predicted) rn
RG-U34C:RC_AI230374_AT Echinoderm microtubule associated protein like 4 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB07379 Hypothetical protein F38A6.2 [Caenorhabditis elegans] ref|NP_508007.1| Emap-LIKE Protein family member (elp-1) [Caenorhabditis elegans] sp|O45487|EMAL_CAEEL Echinoderm microtubule-associated protein-like elp-1 0.0
blast CAE61641 Hypothetical protein CBG05574 [Caenorhabditis briggsae] 0.0
blast XP_393565 PREDICTED: similar to ENSANGP00000020028 [Apis mellifera] 2.0E-88
blast XP_393565 PREDICTED: similar to ENSANGP00000020028 [Apis mellifera] 3.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR005108 EMBL-EBI HELP domain 1.2E-46
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0076
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0014
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.3E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.088
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0044
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2
Pfam IPR005108 EMBL-EBI HELP domain 2.1E-32
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0076
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0014
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.3E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.088
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0044
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2
Pfam IPR005108 EMBL-EBI HELP domain 1.2E-46
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0076
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0014
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.3E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.088
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0044
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2
Sequence
Target Sequence 
>C. ELEGANS:192566_S_AT
ggatttgctgcaggactttggattgtgatgaacattaccaaacagcaaacgattcaagag
aaaaaagaagggactgctcccattacggcagtgaaatttgctccaagtggagctacattc
gcagttgcaacgaaggatcctcatctcactatctatcgcatcgatgcatctaaaaatttg
cttgttattgctcgaattcatcatattcccgctccaattgttgccctagatttttcatcc
gattctcaatatttacgaggacagtctattggagcgcatttactattttggacgaaagcc
ggagaaatttgtgatggaacatctgtaaaagatgtgaaatggggtagttcaagggtgaaa
attggttttgaaactgctctcgttgcacattcatcaaatggacaagtaactgctgttgct
cagtgcgaggacatttcagcatgtggcatggaaaatggtacaatccggatatacaaaaat
ccagtaaccagtgtaacggccggtttcgttgaacttcttggacacggaaggattattaaa
agtgttgcattctcaaacaaaattcaactgttctcatgttcgccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTTGCTGCAGGACTTTGGATTG 697 509 2068 Antisense
AAGAAGGGACTGCTCCCATTACGGC 385 39 2132 Antisense
GTGGAGCTACATTCGCAGTTGCAAC 312 491 2174 Antisense
GCAACGAAGGATCCTCATCTCACTA 267 321 2194 Antisense
ATCTCACTATCTATCGCATCGATGC 15 33 2210 Antisense
TGTTGCCCTAGATTTTTCATCCGAT 568 563 2286 Antisense
GAGGACAGTCTATTGGAGCGCATTT 286 405 2324 Antisense
GAGCGCATTTACTATTTTGGACGAA 75 387 2339 Antisense
TTGAAACTGCTCTCGTTGCACATTC 357 705 2435 Antisense
GTAACTGCTGTTGCTCAGTGCGAGG 107 463 2473 Antisense
TTCAACTGTTCTCATGTTCGCCAAC 548 685 2630 Antisense
Sequence Source Affymetrix Proprietary Database