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[192564_at] Zinc finger, C4 type (two domains)

Description Y22F5A.1 /REP_DB=WormBase Gene ID /WP=CE16602 /TR=O62412 /GB=CAA16320.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 91      6grp_total > 85      4grp_total > 02      6grp_highest_sub > In      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 195.9
(-1.6)
P 		190.8
(-1.7)
P 		133.3
(-3)
P 		407.3
(3)
P 		274
B 178.9
(-2.7)
P 		165.1
(-3)
P 		187.2
(-2.5)
P 		420.3
(3)
P 		255
C 194.6
(-2.9)
P 		190.9
(-3)
P 		216.2
(-2.4)
P 		437.4
(3)
P 		247
avr 189.8
(-2.7) 		182.3
(-2.9) 		178.9
(-3) 		421.7
(3) 		243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 127.5
(-3)
P 		192.9
(0.9)
P 		183.8
(0.4)
P 		200.1
(1.3)
P 		227.9
(3)
P 		213.4
(2.1)
P 		100
B 186.8
(-2.4)
P 		179.7
(-3)
P 		243.1
(2.3)
P 		229.3
(1.2)
P 		219.4
(0.3)
P 		250.9
(3)
P 		71
C 159.4
(-2.6)
P 		151.8
(-3)
P 		171.2
(-2)
P 		228.2
(1.1)
P 		206.8
(-0.1)
P 		264.5
(3)
P 		113
avr 157.9
(-3) 		174.8
(-1.8) 		199.4
(-0.1) 		219.2
(1.3) 		218
(1.2) 		242.9
(3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 71.3
(3)
P 		41.4
(-1.9)
P 		34.9
(-3)
P 		59.6
(1.1)
P 		36
B 57.1
(-1)
P 		40.8
(-3)
P 		43.4
(-2.7)
P 		89.6
(3)
P 		49
C 64.4
(-0.2)
P 		54.9
(-3)
P 		75.3
(3)
P 		73.8
(2.6)
P 		20
avr 64.3
(0.9) 		45.7
(-3) 		51.2
(-1.8) 		74.3
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 23.5
(-3)
P 		68.6
(3)
P 		40
(-0.8)
P 		50.8
(0.6)
P 		68.8
(3)
P 		52
(0.8)
P 		45
B 65
(-2)
P 		59.8
(-2.9)
P 		59
(-3)
P 		60.7
(-2.7)
P 		89.1
(2.2)
P 		93.6
(3)
P 		35
C 59.1
(-0.9)
P 		46.3
(-2.6)
P 		43.6
(-3)
P 		45.9
(-2.7)
P 		66.9
(0.1)
P 		88.5
(3)
P 		45
avr 49.2
(-2.7) 		58.2
(-0.9) 		47.5
(-3) 		52.5
(-2) 		74.9
(2.4) 		78
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12254
Sequence Type Exemplar sequence
Representative Public ID Y22F5A.1 NCBI
Target Description Y22F5A.1 /REP_DB=WormBase Gene ID /WP=CE16602 /TR=O62412 /GB=CAA16320.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073238 NCBI Caenorhabditis elegans Y22F5A.1 (Y22F5A.1) mRNA, complete cds. 11/11 None
SNAP00000026001 ENSEMBL cdna:SNAP chromosome:CEL140:V:10258941:10261235:1 11/11 None
GENEFINDER00000026009 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10258941:10261235:1 11/11 None
Y22F5A.1 ENSEMBL cdna:known chromosome:CEL140:V:10258941:10261133:1 gene:Y22F5A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10258940-10261133(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-232
Ensembl Y22F5A.1
Entrez Gene 179426 Entrez gene
SwissProt O62412 EMBL-EBI
WormBase CE38441 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16320 Hypothetical protein Y22F5A.1 [Caenorhabditis elegans] ref|NP_505639.2| Y22F5A.1 [Caenorhabditis elegans] 0.0
blast CAE64776 Hypothetical protein CBG09567 [Caenorhabditis briggsae] 0.0
blast CAE64776 Hypothetical protein CBG09567 [Caenorhabditis briggsae] 1.0E-179
blast AAM45373 Hypothetical protein F44E7.8 [Caenorhabditis elegans] ref|NP_504518.3| F44E7.8 [Caenorhabditis elegans] 4.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.6E-21
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.9E-4
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.2E-23
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.9E-4
Sequence
Target Sequence 
>C. ELEGANS:192564_AT
tcaattccttttcaatctcttcggaacgaagaacaaatgcagatgctgaaatctatttgg
gttcaatggaaaagactggaacgatatgcttcaactgctcaaatatttggaaaaagaatg
tacgaggatcaaattgtgactctagttccaggtcaagctgcgtatctgaacaaagtccgt
gtggaaaattgctcctttatctacaaaaaagcggaaggaatgaagttttttatggagaat
ttcaatactcgaatgatggaagaagttggaaaacctttagttgaattagagttgacaagt
gtggagattgcatttatgttggctcagctttcctggcaggtagcaggaaaagaactccaa
ggagatgttttgaaagcaagtgaatcagaacaagaagctttagccaatgaacttcacctc
tattatattcaagagctacgccttcctaattatgcagcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTCCTTTTCAATCTCTTCGGA 317 633 682 Antisense
GGAACGATATGCTTCAACTGCTCAA 55 531 759 Antisense
GACTCTAGTTCCAGGTCAAGCTGCG 329 371 819 Antisense
GCTGCGTATCTGAACAAAGTCCGTG 573 295 838 Antisense
GTGGAAAATTGCTCCTTTATCTACA 128 491 862 Antisense
ATTGCATTTATGTTGGCTCAGCTTT 140 7 988 Antisense
GCTCAGCTTTCCTGGCAGGTAGCAG 72 301 1003 Antisense
AGCTTTAGCCAATGAACTTCACCTC 581 77 1077 Antisense
GAACTTCACCTCTATTATATTCAAG 76 351 1090 Antisense
TATATTCAAGAGCTACGCCTTCCTA 167 653 1105 Antisense
CTACGCCTTCCTAATTATGCAGCTA 46 227 1117 Antisense
Sequence Source Affymetrix Proprietary Database