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[192562_at] 40S ribosomal protein S7

Description ZC434.2 /REP_DB=WormBase Gene ID /WP=CE06577 /GEN=rps-7 /TR=Q23312 /GB=CAB00058.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=40S ribosomal protein S7
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 31      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 08      6grp_total > 32      4grp_total > 25      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9588
1 2 3 4 range
A 22856.4
(-3)
P 		29608.6
(2.1)
P 		27870.7
(0.8)
P 		30826.1
(3)
P 		7970
B 24204.7
(-3)
P 		26274.8
(-0.5)
P 		29178.8
(3)
P 		28128.7
(1.7)
P 		4974
C 22188.9
(-3)
P 		25630.4
(-0.8)
P 		23219.5
(-2.4)
P 		31777
(3)
P 		9588
avr 23083.3
(-3) 		27171.3
(0.4) 		26756.3
(0.1) 		30243.9
(3) 		7161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7549
1 2 3 4 5 6 range
A 19915.2
(2.2)
P 		20554
(3)
P 		19200
(1.4)
P 		19127.2
(1.3)
P 		15472.8
(-3)
P 		17069.3
(-1.1)
P 		5081
B 17433
(-0)
P 		17926.4
(0.4)
P 		21213.6
(3)
P 		16846.6
(-0.5)
P 		15906.6
(-1.2)
P 		13664.4
(-3)
P 		7549
C 18438
(0.2)
P 		17438.1
(-1.2)
P 		20435.8
(3)
P 		16172.1
(-3)
P 		20050.1
(2.5)
P 		16161.9
(-3)
P 		4274
avr 18595.4
(0.8) 		18639.5
(0.9) 		20283.1
(3) 		17382
(-0.7) 		17143.2
(-1.1) 		15631.9
(-3) 		4651
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3810
1 2 3 4 range
A 8322
(3)
P 		6427.2
(0)
P 		7285.9
(1.4)
P 		4512.3
(-3)
P 		3810
B 7718.7
(3)
P 		6489.3
(-1.3)
P 		6761.4
(-0.3)
P 		5994.2
(-3)
P 		1725
C 7345.1
(1.4)
P 		7368.9
(1.4)
P 		8092.7
(3)
P 		5358.1
(-3)
P 		2735
avr 7795.3
(3) 		6761.8
(0.5) 		7380
(2) 		5288.2
(-3) 		2507

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4058
1 2 3 4 5 6 range
A 3671.2
(-3)
P 		7310
(3)
P 		4181.3
(-2.2)
P 		4851.1
(-1.1)
P 		4669
(-1.4)
P 		4155.8
(-2.2)
P 		3639
B 6065.8
(1.8)
P 		5967
(1.5)
P 		5151.3
(-0.9)
P 		4462.1
(-3)
P 		6462.6
(3)
P 		5095.4
(-1.1)
P 		2001
C 6834.2
(3)
P 		5320.9
(0.5)
P 		5201.3
(0.3)
P 		3252.2
(-3)
P 		6487.9
(2.4)
P 		5410.3
(0.6)
P 		3582
avr 5523.7
(1) 		6199.3
(3) 		4844.6
(-1) 		4188.5
(-3) 		5873.2
(2) 		4887.2
(-0.9) 		2011
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192562_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2222
Sequence Type Exemplar sequence
Representative Public ID ZC434.2 NCBI
Target Description ZC434.2 /REP_DB=WormBase Gene ID /WP=CE06577 /GEN=rps-7 /TR=Q23312 /GB=CAB00058.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=40S ribosomal protein S7
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060307(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060307 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-7) (rps-7) mRNA, complete cds. 11/11 None
GENEFINDER00000018745 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10337474:10339820:1 11/11 None
SNAP00000018733 ENSEMBL cdna:SNAP chromosome:CEL140:I:10339011:10339820:1 11/11 None
ZC434.2.3 ENSEMBL cdna:known chromosome:CEL140:I:10338994:10339869:1 gene:ZC434.2 11/11 None
ZC434.2.1 ENSEMBL cdna:known chromosome:CEL140:I:10338994:10339869:1 gene:ZC434.2 11/11 None
ZC434.2.2 ENSEMBL cdna:known chromosome:CEL140:I:10339001:10339869:1 gene:ZC434.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10338941-10339751(+) 100.0 100.0
Public Domain and Genome References
Gene Title 40S ribosomal protein S7
Gene Symbol rps-7
Ensembl ZC434.2
Entrez Gene 172901 Entrez gene
SwissProt Q23312 EMBL-EBI
WormBase CE06577 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246503_AT 40S ribosomal protein S7 (RPS7C) at
DROSOPHILA_2:1627181_AT Ribosomal protein S7 dm
DROSOPHILA_2:1638615_S_AT Ribosomal protein S7 dm
DROSGENOME1:150881_AT Ribosomal protein S7 dm
RG-U34A:RC_AI175486_AT similar to ribosomal protein S7 rn
RG-U34A:X53377CDS_S_AT similar to ribosomal protein S7 rn
RAE230A:1398751_AT similar to ribosomal protein S7 rn
RAT230_2:1398751_AT similar to ribosomal protein S7 rn
YEAST_2:1777982_AT Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Bp; interacts with Kti11p; deletion causes hypersensitivity to zymocin; has similarity to rat S7 and Xenopus S8 ribosomal proteins Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00066 Hypothetical protein Y106G6G.1 [Caenorhabditis elegans] emb|CAA22057.1| Hypothetical protein Y106G6G.1 [Caenorhabditis elegans] ref|NP_492707.1| Y106G6G.1 [Caenorhabditis elegans] 1.0E-154
blast CAB00058 Hypothetical protein ZC434.2 [Caenorhabditis elegans] ref|NP_492708.1| Ribosomal Protein, Small subunit family member (rps-7) [Caenorhabditis elegans] sp|Q23312|RS7_CAEEL 40S ribosomal protein S7 emb|CAE73793.1| Hypothetical protein CBG21343 [Caenorhabditis briggsae] 1.0E-105
blast CAE73792 Hypothetical protein CBG21342 [Caenorhabditis briggsae] 1.0E-82
blast AAN05602 ribosomal protein S7 [Argopecten irradians] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR000554 EMBL-EBI Ribosomal protein S7E 1.2E-97
Pfam IPR000554 EMBL-EBI Ribosomal protein S7E 1.2E-97
Sequence
Target Sequence 
>C. ELEGANS:192562_AT
atgcccgagatcatcggcaagcttttgaagtccgacggaaaggtcgtctctgagatcgag
aagcaagtctcacaagctctcattgacttggagaccaacgatgatgtccagagccaattg
aaggaactgtacatcgtcggagtcaaggaggttgagcttggaaacaagtccgccatcatc
atctacgttccagtcccacaactcaaggctttccacaagatccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCCGAGATCATCGGCAAGCTTT 502 41 13 Antisense
GGCAAGCTTTTGAAGTCCGACGGAA 178 501 28 Antisense
GTCCGACGGAAAGGTCGTCTCTGAG 359 475 42 Antisense
AGGTCGTCTCTGAGATCGAGAAGCA 550 57 53 Antisense
GAAGCAAGTCTCACAAGCTCTCATT 392 341 72 Antisense
AGCTCTCATTGACTTGGAGACCAAC 120 81 87 Antisense
ACCAACGATGATGTCCAGAGCCAAT 196 85 106 Antisense
GAAGGAACTGTACATCGTCGGAGTC 425 333 132 Antisense
GTACATCGTCGGAGTCAAGGAGGTT 114 461 141 Antisense
GCTTGGAAACAAGTCCGCCATCATC 360 307 168 Antisense
ACTCAAGGCTTTCCACAAGATCCAC 294 97 213 Antisense
Sequence Source Affymetrix Proprietary Database