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[192559_s_at] von Willebrand factor type A domain

Description F35C5.8 /REP_DB=WormBase Gene ID /WP=CE15949 /TR=O45443 /GB=CAB03057.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=von Willebrand factor type A domain
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 81      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 44      6grp_total > 82      4grp_total > 60      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1477
1 2 3 4 range
A 1617.1
(2.4)
P 		1752.9
(3)
P 		1638.6
(2.5)
P 		308.4
(-3)
P 		1445
B 1692.4
(3)
P 		1613.3
(2.7)
P 		1555.1
(2.4)
P 		324.7
(-3)
P 		1368
C 1741.2
(3)
P 		1477.4
(1.9)
P 		1717.6
(2.9)
P 		275.6
(-3)
P 		1466
avr 1683.6
(3) 		1614.5
(2.7) 		1637.1
(2.8) 		302.9
(-3) 		1381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2009
1 2 3 4 5 6 range
A 1219.6
(-2.5)
P 		1543.7
(-1.6)
P 		2030.5
(-0.1)
P 		3070.1
(3)
P 		1764
(-0.9)
P 		1061
(-3)
P 		2009
B 1372.8
(-2.4)
P 		1668.9
(-0.9)
P 		1723.6
(-0.6)
P 		2326.4
(2.4)
P 		2454.8
(3)
P 		1248.4
(-3)
P 		1206
C 1491
(-1.6)
P 		1410.7
(-2)
P 		2110.5
(1.3)
P 		2141.5
(1.4)
P 		2484.1
(3)
P 		1202.1
(-3)
P 		1282
avr 1361.1
(-2.1) 		1541.1
(-1.3) 		1954.9
(0.5) 		2512.7
(3) 		2234.3
(1.8) 		1170.5
(-3) 		1342
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 554
1 2 3 4 range
A 588.8
(3)
P 		380.5
(0.7)
P 		428.4
(1.2)
P 		45.1
(-3)
P 		544
B 539.7
(3)
P 		398.5
(1.2)
P 		360.4
(0.7)
P 		69.2
(-3)
P 		471
C 576.4
(2.8)
P 		424.7
(1.1)
P 		598.6
(3)
P 		46.5
(-3)
P 		552
avr 568.3
(3) 		401.2
(1.1) 		462.5
(1.8) 		53.6
(-3) 		515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 773
1 2 3 4 5 6 range
A 224.8
(-3)
P 		549
(0.5)
P 		442.2
(-0.6)
P 		778.7
(3)
P 		532.3
(0.3)
P 		258.3
(-2.6)
P 		554
B 477.7
(-2.4)
P 		555.5
(-1.6)
P 		418.5
(-3)
P 		616.2
(-1)
P 		997.4
(3)
P 		465.5
(-2.5)
P 		579
C 552.6
(-0.8)
P 		430.5
(-2.6)
P 		537.2
(-1)
P 		430.6
(-2.6)
P 		803.8
(3)
P 		402.4
(-3)
P 		401
avr 418.4
(-2.4) 		511.7
(-1) 		466
(-1.6) 		608.5
(0.5) 		777.8
(3) 		375.4
(-3) 		402
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192559_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3385
Sequence Type Exemplar sequence
Representative Public ID F35C5.8 NCBI
Target Description F35C5.8 /REP_DB=WormBase Gene ID /WP=CE15949 /TR=O45443 /GB=CAB03057.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064344 NCBI Caenorhabditis elegans F35C5.8 (F35C5.8) mRNA, complete cds. 11/11 A 
SNAP00000007550 ENSEMBL cdna:SNAP chromosome:CEL140:II:12901229:12906442:1 11/11 None
GENEFINDER00000007557 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12895356:12903194:1 11/11 None
F35C5.8 ENSEMBL cdna:known chromosome:CEL140:II:12901191:12903213:1 gene:F35C5.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12901225-12903191(+) 100.0 100.0
Public Domain and Genome References
Gene Title von Willebrand factor type A domain
Ensembl F35C5.8
Entrez Gene 174928 Entrez gene
SwissProt O45443 EMBL-EBI
WormBase CE15949 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03057 Hypothetical protein F35C5.8 [Caenorhabditis elegans] ref|NP_496745.1| F35C5.8 [Caenorhabditis elegans] 0.0
blast CAB03059 Hypothetical protein F35C5.9 [Caenorhabditis elegans] ref|NP_496746.1| F35C5.9 [Caenorhabditis elegans] 0.0
blast CAB03056 Hypothetical protein F35C5.7 [Caenorhabditis elegans] ref|NP_496744.1| F35C5.7 [Caenorhabditis elegans] 0.0
blast CAB03058 Hypothetical protein F35C5.6 [Caenorhabditis elegans] ref|NP_496743.1| F35C5.6 [Caenorhabditis elegans] 0.0
blast CAE60631 Hypothetical protein CBG04274 [Caenorhabditis briggsae] 0.0
blast CAE60630 Hypothetical protein CBG04273 [Caenorhabditis briggsae] 1.0E-161
blast CAB03059 Hypothetical protein F35C5.9 [Caenorhabditis elegans] ref|NP_496746.1| F35C5.9 [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.4E-24
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 6.5E-29
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 7.8E-29
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 7.1E-30
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.1E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007557 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:192559_S_AT
tcttaaaagccgcgggatcccggtggtgactgtgaatactgggtcaagttccgatactca
ggcgtatctcaagcagattgccagcgacaatatgagcttcgcaattgccgacggaaatgt
tacccaagagattttgaaagcaatgacggatacaaactgcttctgcgaacaaggttgggt
ccaatacaattatccatggaataaccttcaaaatcgctacggaacttgcctttacactga
cacaaccgattattccagtagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTAAAAGCCGCGGGATCCCGGTG 70 607 507 Antisense
GATCCCGGTGGTGACTGTGAATACT 352 415 522 Antisense
ATACTGGGTCAAGTTCCGATACTCA 60 25 542 Antisense
GGCGTATCTCAAGCAGATTGCCAGC 321 541 567 Antisense
GATTGCCAGCGACAATATGAGCTTC 21 435 582 Antisense
TATGAGCTTCGCAATTGCCGACGGA 539 655 597 Antisense
TGCCGACGGAAATGTTACCCAAGAG 674 577 612 Antisense
GCTTCTGCGAACAAGGTTGGGTCCA 13 303 665 Antisense
ATCGCTACGGAACTTGCCTTTACAC 421 37 719 Antisense
TGCCTTTACACTGACACAACCGATT 52 585 733 Antisense
GACACAACCGATTATTCCAGTAGAG 134 365 745 Antisense
Sequence Source Affymetrix Proprietary Database