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[192553_at]

Description F52F12.4 /REP_DB=WormBase Gene ID /WP=CE10846 /TR=O02273 /GB=CAB05735.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (4 domains)
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 94      6grp_total > 96      4grp_total > 33      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 264
(-3)
P 		413.2
(1.6)
P 		448
(2.7)
P 		458.1
(3)
P 		194
B 320.3
(-3)
P 		372.2
(-0.4)
P 		441
(3)
P 		373.8
(-0.3)
P 		121
C 253.2
(-3)
P 		343.4
(3)
P 		294.1
(-0.3)
P 		286.5
(-0.8)
P 		90
avr 279.2
(-3) 		376.3
(2.1) 		394.4
(3) 		372.8
(1.9) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1131
1 2 3 4 5 6 range
A 159.1
(-3)
P 		201
(-2.7)
P 		224.8
(-2.6)
P 		571.4
(-0.4)
P 		911.2
(1.8)
P 		1106.1
(3)
P 		947
B 188
(-3)
P 		192.7
(-3)
P 		359.7
(-2.1)
P 		617.9
(-0.6)
P 		979.7
(1.3)
P 		1281.8
(3)
P 		1094
C 150.4
(-3)
P 		307.2
(-2)
P 		421.9
(-1.2)
P 		615.8
(0.1)
P 		731.4
(0.9)
P 		1052.2
(3)
P 		902
avr 165.8
(-3) 		233.6
(-2.6) 		335.5
(-2) 		601.7
(-0.3) 		874.1
(1.3) 		1146.7
(3) 		981
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 96.1
(0.5)
P 		89.7
(-0.3)
P 		117.1
(3)
P 		67.1
(-3)
P 		50
B 102.2
(3)
P 		91.9
(0.3)
P 		102.2
(3)
P 		79.7
(-3)
P 		23
C 83.8
(0.9)
P 		98.7
(2.6)
P 		102.5
(3)
P 		48.3
(-3)
P 		54
avr 94
(1.1) 		93.4
(1) 		107.3
(3) 		65
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 449
1 2 3 4 5 6 range
A 29.3
(-3)
P 		71.5
(-2)
P 		49
(-2.5)
P 		144.9
(-0.2)
P 		275
(3)
P 		269.3
(2.9)
P 		246
B 65.4
(-3)
P 		64.2
(-3)
P 		87.4
(-2.7)
P 		163.7
(-1.6)
P 		398
(1.8)
P 		478
(3)
P 		414
C 55.8
(-3)
P 		93.7
(-2.2)
P 		107.4
(-2)
P 		123.8
(-1.6)
P 		236.7
(0.7)
P 		352.2
(3)
P 		296
avr 50.2
(-3) 		76.5
(-2.5) 		81.3
(-2.4) 		144.1
(-1.2) 		303.2
(1.8) 		366.5
(3) 		316
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192553_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1452
Sequence Type Exemplar sequence
Representative Public ID F52F12.4 NCBI
Target Description F52F12.4 /REP_DB=WormBase Gene ID /WP=CE10846 /TR=O02273 /GB=CAB05735.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (4 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060220
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000038777 ENSEMBL cdna:SNAP chromosome:CEL140:I:9909400:9910947:1 11/11 None
GENEFINDER00000038787 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9909400:9910947:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060220 8/11 Cross Hyb Matching Probes None
F52F12.4 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9908681-9910878(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05735 Hypothetical protein F52F12.4 [Caenorhabditis elegans] ref|NP_492621.2| LSY-2-Like family member (lsl-1) [Caenorhabditis elegans] 0.0
blast CAE60274 Hypothetical protein CBG03853 [Caenorhabditis briggsae] 1.0E-115
blast CAE68356 Hypothetical protein CBG14093 [Caenorhabditis briggsae] 9.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.3E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.3E-7
Sequence
Target Sequence 
>C. ELEGANS:192553_AT
tcgaggttggcaatcggtcgacccttcaccttcacaaatagttcgtgcaatcggcgttcg
tctggaattattccgtccgatgctctagtcattcgtgggacatcgatgccctattacaat
ccagagaagaagcgatcggttccgaaacttttattgggtaaagatccttcaaaatgggtt
gatatgatctgccgaaaccagcttatcccactatcttcatttgacgataaaatcatgaga
gctacaatgcgattgactaactgtcacatggcatccgatgttctagaacaagctaaacca
ctcgagtttgagatctttcgatgcccaatttgcaagtgcgaatgtagtggaagagaggat
tgtcaactgcatatgtatgcttctcatgataagaaagaagctgaagaaccaaattattgc
acgaaatgcatgagagtattcgccgacgtagatatgtatcgtcaacaccaaagctatcat
tctcgtgttcaattgatgattcgtaataatgaacttgaaatgggctctccagaagtcgat
atctctcaaatctgctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGGTTGGCAATCGGTCGACCCT 666 597 433 Antisense
ACCCTTCACCTTCACAAATAGTTCG 629 87 453 Antisense
AATAGTTCGTGCAATCGGCGTTCGT 147 173 469 Antisense
GTCCGATGCTCTAGTCATTCGTGGG 112 477 507 Antisense
GACATCGATGCCCTATTACAATCCA 673 369 531 Antisense
TGATCTGCCGAAACCAGCTTATCCC 365 565 617 Antisense
CTTATCCCACTATCTTCATTTGACG 193 223 634 Antisense
GACTAACTGTCACATGGCATCCGAT 497 373 687 Antisense
GAGATCTTTCGATGCCCAATTTGCA 279 397 742 Antisense
ACCAAAGCTATCATTCTCGTGTTCA 393 85 899 Antisense
GTCGATATCTCTCAAATCTGCTACA 667 473 967 Antisense
Sequence Source Affymetrix Proprietary Database