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[192552_at] IG-like C2-type domains

Description F42F12.2 /REP_DB=WormBase Gene ID /WP=CE03313 /GEN=zig-2 /TR=Q20339 /GB=CAA92170.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=IG-like C2-type domains
Cluster 6grp_high1_10_10 > 63      4grp_highest_8_8 > 21      4grp_high_8_8 > 23      6grp_total > 63      4grp_total > 16      6grp_cgc > 65      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 81.6
(-3)
P 		113.9
(0.3)
P 		137.4
(2.7)
P 		140.4
(3)
P 		59
B 72.1
(-3)
P 		87.2
(-2.1)
P 		99.3
(-1.4)
P 		175.7
(3)
P 		104
C 112.5
(-0.9)
P 		91.9
(-3)
P 		125.8
(0.5)
P 		150.6
(3)
P 		59
avr 88.7
(-3) 		97.7
(-2.2) 		120.8
(-0.1) 		155.6
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 136.2
(-3)
P 		223.7
(-0.5)
P 		345.1
(3)
P 		235.8
(-0.1)
P 		207.6
(-0.9)
P 		288.9
(1.4)
P 		209
B 89.9
(-3)
P 		213.2
(1.4)
P 		259.6
(3)
P 		170.2
(-0.2)
P 		204.3
(1)
P 		218
(1.5)
P 		170
C 66.6
(-3)
A 		256.2
(2.1)
P 		261.5
(2.2)
P 		291.4
(3)
P 		189.4
(0.3)
P 		182.4
(0.1)
P 		225
avr 97.6
(-3) 		231
(1.2) 		288.7
(3) 		232.5
(1.2) 		200.4
(0.2) 		229.8
(1.2) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 29.7
(0.6)
P 		24.7
(-1.4)
P 		35.9
(3)
P 		20.6
(-3)
P 		15
B 23
(-2.4)
P 		21.5
(-3)
P 		23
(-2.4)
P 		37.5
(3)
P 		16
C 37.2
(0.8)
P 		26.4
(-2.7)
P 		43.8
(3)
P 		25.4
(-3)
P 		18
avr 30
(0.5) 		24.2
(-3) 		34.2
(3) 		27.8
(-0.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 25.1
(-3)
P 		79.6
(3)
P 		75.2
(2.5)
P 		59.8
(0.8)
P 		62.6
(1.1)
P 		70.3
(2)
P 		55
B 31.3
(-3)
P 		70.9
(1.6)
P 		63
(0.7)
P 		45.1
(-1.4)
P 		83
(3)
P 		81.3
(2.8)
P 		52
C 24.7
(-3)
A 		78.2
(3)
P 		66.5
(1.7)
P 		58.6
(0.8)
P 		61.3
(1.1)
P 		61.1
(1.1)
P 		54
avr 27
(-3) 		76.2
(3) 		68.2
(2) 		54.5
(0.4) 		69
(2.1) 		70.9
(2.4) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192552_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16197
Sequence Type Exemplar sequence
Representative Public ID F42F12.2 NCBI
Target Description F42F12.2 /REP_DB=WormBase Gene ID /WP=CE03313 /GEN=zig-2 /TR=Q20339 /GB=CAA92170.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=IG-like C2-type domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077668 NCBI Caenorhabditis elegans 2 (Zwei) IG-domain protein family member (zig-2) (zig-2) mRNA, complete cds. 11/11 None
SNAP00000001328 ENSEMBL cdna:SNAP chromosome:CEL140:X:12340490:12341304:-1 11/11 None
GENEFINDER00000001338 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12340490:12343777:-1 11/11 None
F42F12.2 ENSEMBL cdna:known chromosome:CEL140:X:12340490:12341304:-1 gene:F42F12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12340489-12341304(-) 100.0 100.0
Public Domain and Genome References
Gene Title IG-like C2-type domains
Gene Symbol zig-2
Ensembl F42F12.2
Entrez Gene 192087 Entrez gene
SwissProt Q20339 EMBL-EBI
WormBase CE03313 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92170 Hypothetical protein F42F12.2 [Caenorhabditis elegans] ref|NP_510069.1| 2 (Zwei) IG-domain protein family member (zig-2) [Caenorhabditis elegans] gb|AAL59607.1| secreted 2-immunoglobulin-domain protein ZIG-2 [Caenorhabditis elegans] 1.0E-137
blast CAA92170 Hypothetical protein F42F12.2 [Caenorhabditis elegans] ref|NP_510069.1| 2 (Zwei) IG-domain protein family member (zig-2) [Caenorhabditis elegans] gb|AAL59607.1| secreted 2-immunoglobulin-domain protein ZIG-2 [Caenorhabditis elegans] 1.0E-124
blast CAE70323 Hypothetical protein CBG16851 [Caenorhabditis briggsae] 6.0E-44
blast CAE70323 Hypothetical protein CBG16851 [Caenorhabditis briggsae] 1.0E-43
blast AAA68401 2 (zwei) ig-domain protein protein 3 [Caenorhabditis elegans] ref|NP_509336.1| 2 (Zwei) IG-domain protein family member (zig-3) [Caenorhabditis elegans] gb|AAL59608.1| secreted 2-immunoglobulin-domain protein ZIG-3 [Caenorhabditis elegans] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.043
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0015
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.043
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.0015
Sequence
Target Sequence 
>C. ELEGANS:192552_AT
tcttctgaagtttacccgaacaccgaatgattccaacgtcacatttggtgaaaagtttgt
gctctcttgtggagcgaacggtgctcccctaccatcaatttactgggagctcaatggaat
gagaattcaaggagaggagacttcaaacgtgtacgagaacattttgaacgatggaaaaca
agtctcaaatgcagcaatggtgtccagccattacagaatcccatgtgccacggcccgcaa
ctctggggcttataagtgtatcatagataatgggcttaccaagttagagcatgttgcaaa
agtatttgttggtggaaacaaaaccaattgtgctttgaacgataatggtgccccatttat
ttcaatgactgtcgactttcgtttggaaatatctaacaacgcagttgccctatcatgccg
ttccgagacagctacagagtggtcatggcacaaaggagaacaacttttgaccaatgatgg
agagcgttaccagatgttccccagtggtgatttgattattcgcaacatttcctggtcaga
catgggcgaatacaactgtaccgcacgcaaccattttggagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTGAAGTTTACCCGAACACCG 583 615 105 Antisense
TTGTGGAGCGAACGGTGCTCCCCTA 246 707 171 Antisense
GCTCCCCTACCATCAATTTACTGGG 88 261 187 Antisense
GCCATTACAGAATCCCATGTGCCAC 498 279 311 Antisense
GGCCCGCAACTCTGGGGCTTATAAG 357 399 336 Antisense
ATGGTGCCCCATTTATTTCAATGAC 282 51 449 Antisense
TAACAACGCAGTTGCCCTATCATGC 710 639 498 Antisense
TGGAGAGCGTTACCAGATGTTCCCC 102 549 582 Antisense
TATTCGCAACATTTCCTGGTCAGAC 286 665 621 Antisense
GGGCGAATACAACTGTACCGCACGC 103 493 648 Antisense
TACCGCACGCAACCATTTTGGAGAG 1 651 663 Antisense
Sequence Source Affymetrix Proprietary Database