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[192548_s_at] Zinc finger, C4 type (two domains) /// Zinc finger, C4 type (two domains)

Description H22D14.1 /REP_DB=WormBase Gene ID /WP=CE19931 /TR=Q9XTB9 /GB=CAA21593.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 03      4grp_total > 42      6grp_cgc > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 5.1
(-3)
A 		41.5
(3)
A 		11
(-2)
A 		14.6
(-1.4)
A 		36
B 10.1
(-2.2)
A 		45.7
(3)
A 		27.1
(0.3)
A 		4.4
(-3)
A 		41
C 6.9
(-2.7)
A 		34.7
(1.6)
A 		4.6
(-3)
A 		44.2
(3)
A 		40
avr 7.4
(-3) 		40.6
(3) 		14.2
(-1.8) 		21.1
(-0.5) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 259.4
(3)
P 		241.7
(2.6)
P 		218.9
(2)
P 		166.1
(0.7)
P 		242.7
(2.6)
A 		14.6
(-3)
A 		245
B 228.3
(1.7)
P 		204.5
(0.9)
P 		192.6
(0.6)
P 		271
(3)
P 		217.8
(1.3)
P 		78.4
(-3)
A 		193
C 222.1
(-0.5)
P 		411.5
(3)
P 		133.1
(-2.1)
P 		322.1
(1.4)
P 		134.1
(-2.1)
P 		83.6
(-3)
A 		328
avr 236.6
(1.7) 		285.9
(3) 		181.5
(0.2) 		253.1
(2.1) 		198.2
(0.7) 		58.9
(-3) 		227
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.9
(-3)
A 		9
(3)
A 		2.9
(-2.2)
A 		2.1
(-2.8)
A 		7
B 3.2
(-1.7)
A 		11.3
(3)
A 		6.3
(0.1)
A 		0.9
(-3)
A 		10
C 2.3
(-2.5)
A 		10
(3)
A 		1.6
(-3)
A 		7.4
(1.1)
A 		8
avr 2.5
(-3) 		10.1
(3) 		3.6
(-2.1) 		3.5
(-2.2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 47.8
(0.2)
P 		86
(3)
P 		47.7
(0.2)
P 		42.1
(-0.2)
P 		73.2
(2.1)
A 		3.6
(-3)
A 		82
B 79.4
(2.1)
P 		68.1
(0.9)
P 		46.8
(-1.2)
P 		71.8
(1.3)
P 		88.5
(3)
P 		29.3
(-3)
A 		59
C 82.3
(0.3)
P 		125.6
(3)
P 		33.9
(-2.6)
P 		64.8
(-0.7)
P 		43.4
(-2.1)
P 		28
(-3)
A 		98
avr 69.8
(1.1) 		93.2
(3) 		42.8
(-1.1) 		59.6
(0.2) 		68.4
(1) 		20.3
(-3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192548_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10340
Sequence Type Exemplar sequence
Representative Public ID H22D14.1 NCBI
Target Description H22D14.1 /REP_DB=WormBase Gene ID /WP=CE19931 /TR=Q9XTB9 /GB=CAA21593.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069220(11), NM_069221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069220 NCBI Caenorhabditis elegans H22D14.1 (H22D14.1) mRNA, complete cds. 11/11 None
NM_069221 NCBI Caenorhabditis elegans F14A5.1 (F14A5.1) mRNA, complete cds. 11/11 None
SNAP00000024719 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9292273:9293966:-1 11/11 None
GENEFINDER00000024720 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9292121:9293902:-1 11/11 None
H22D14.1 ENSEMBL cdna:known chromosome:CEL140:IV:9284870:9286382:-1 gene:H22D14.1 11/11 None
F14A5.1 ENSEMBL cdna:known chromosome:CEL140:IV:9292363:9293902:-1 gene:F14A5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010703 6/11 Cross Hyb Matching Probes None
GENEFINDER00000010704 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9284875-9286388(-) 100.0 100.0
chrIV:9292368-9293736(-) 97.49 97.49
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Zinc finger, C4 type (two domains)
Gene Symbol nhr-264
nhr-267
Ensembl H22D14.1
F14A5.1
Entrez Gene 184443 Entrez gene
186760 Entrez gene
SwissProt Q19438 EMBL-EBI
Q9XTB9 EMBL-EBI
WormBase CE05626 Wormbase
CE19931 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21593 Hypothetical protein H22D14.1 [Caenorhabditis elegans] emb|CAA18356.1| Hypothetical protein H22D14.1 [Caenorhabditis elegans] ref|NP_501621.1| H22D14.1 [Caenorhabditis elegans] 0.0
blast CAB00091 Hypothetical protein F14A5.1 [Caenorhabditis elegans] ref|NP_501622.1| F14A5.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.8E-19
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.0E-19
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.0E-19
Sequence
Target Sequence 
>C. ELEGANS:192548_S_AT
cgacgagttacttcaattttatttgaaagaagttgagagaactatggttcaaaaacaacg
tggattggcaaaaaatgccctacttgctgaatcaatgaatgaattaatgataatctctgc
atatcaaaatggattatcaatggaatcatgtatgcattgtccaggagttaattctttgga
aaaggaagacgttcaaactttactgaaatattttcaatttgcaaatgtttggatggattc
agtcagagcatattcaatgtcaaatgtagatatttatgaaacaactcctaaagacaaaag
actatcagaatatattcaacaagtgaaattaactcttggatcctcattttcccaattgaa
attaaatctttatgaattcgcagctctcaaatcatattgcatctggaatatgggattctt
tgagacaagtattgctatgaaaattatagcaagagagcattatattggagttaccgctgc
actcagaaattattatagaactcaaacaaaaatgagtgatatggacattgcaattcgaat
tg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACGAGTTACTTCAATTTTATTTG 511 249 462 Antisense
AAATGCCCTACTTGCTGAATCAATG 99 119 534 Antisense
CATGTATGCATTGTCCAGGAGTTAA 582 209 608 Antisense
TGTTTGGATGGATTCAGTCAGAGCA 228 561 687 Antisense
TAACTCTTGGATCCTCATTTTCCCA 270 637 791 Antisense
GGATCCTCATTTTCCCAATTGAAAT 510 513 799 Antisense
TTATGAATTCGCAGCTCTCAAATCA 392 679 831 Antisense
GGGATTCTTTGAGACAAGTATTGCT 553 495 873 Antisense
GAGAGCATTATATTGGAGTTACCGC 341 393 914 Antisense
GGAGTTACCGCTGCACTCAGAAATT 608 517 928 Antisense
GATATGGACATTGCAATTCGAATTG 304 425 979 Antisense
Sequence Source Affymetrix Proprietary Database