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[192546_at] Ovarian protein (fly)

Description C40H1.1 /REP_DB=WormBase Gene ID /WP=CE00109 /GEN=cpb-1 /TR=SW:Q03571 /GB=CAA79552.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ovarian protein (fly)
Cluster 6grp_total > 98      4grp_total > 45      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.7
(3)
A
8
(1)
A
5.9
(-1.5)
A
4.6
(-3)
A
5
B 10.2
(-1.4)
A
13.3
(0.3)
A
7.3
(-3)
A
18.1
(3)
A
11
C 20.7
(3)
A
11.9
(-0.6)
A
12.8
(-0.2)
A
6
(-3)
A
15
avr 13.5
(3)
11.1
(0)
8.7
(-3)
9.6
(-1.9)
5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 5.2
(-3)
A
7.3
(-3)
A
7.8
(-2.9)
A
13.9
(-2.8)
A
151.8
(0.4)
A
264.8
(3)
P
260
B 4.7
(-3)
A
8
(-2.9)
A
5.5
(-3)
A
75
(-0.7)
A
157.4
(1.9)
A
191
(3)
P
186
C 5.3
(-3)
A
6
(-3)
A
26.2
(-2.4)
A
11
(-2.8)
A
140.8
(0.7)
P
222.4
(3)
P
217
avr 5.1
(-3)
7.1
(-2.9)
13.2
(-2.8)
33.3
(-2.2)
150
(0.9)
226.1
(3)
221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.5
(3)
A
1.7
(-0.9)
A
1.6
(-1.1)
A
0.7
(-3)
A
3
B 3.2
(1.1)
A
3.3
(1.4)
A
1.7
(-3)
A
3.9
(3)
A
2
C 6.8
(3)
A
3.4
(-0.5)
A
4.4
(0.5)
A
1
(-3)
A
6
avr 4.5
(3)
2.8
(-0.9)
2.6
(-1.4)
1.9
(-3)
3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 1
(-3)
A
2.6
(-2.8)
A
1.7
(-2.9)
A
3.5
(-2.8)
A
45.8
(1.2)
A
64.5
(3)
P
64
B 1.6
(-3)
A
2.7
(-2.9)
A
1.3
(-3)
A
19.9
(-1.4)
A
63.9
(2.4)
A
71.2
(3)
P
70
C 1.9
(-3)
A
1.8
(-3)
A
6.7
(-2.6)
A
2.2
(-3)
A
45.6
(0.6)
P
74.5
(3)
P
73
avr 1.5
(-3)
2.4
(-2.9)
3.2
(-2.9)
8.5
(-2.4)
51.8
(1.4)
70.1
(3)
69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192546_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6852
Sequence Type Exemplar sequence
Representative Public ID C40H1.1 NCBI
Target Description C40H1.1 /REP_DB=WormBase Gene ID /WP=CE00109 /GEN=cpb-1 /TR=SW:Q03571 /GB=CAA79552.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ovarian protein (fly)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066650(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_066650 NCBI Caenorhabditis elegans CPEB polyA binding family member (cpb-1) (cpb-1) mRNA, complete cds. 11/11 None
GENEFINDER00000000790 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9322821:9324192:1 11/11 None
SNAP00000000784 ENSEMBL cdna:SNAP chromosome:CEL140:III:9322857:9324192:1 11/11 None
C40H1.1 ENSEMBL cdna:known chromosome:CEL140:III:9322234:9324743:1 gene:C40H1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9322816-9324188(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ovarian protein (fly)
Gene Symbol cpb-1
Ensembl C40H1.1
Entrez Gene 176310 Entrez gene
SwissProt Q03571 EMBL-EBI
WormBase CE00109 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597116_AT similar to cytoplasmic polyadenylation element binding protein 4 cfa
CANINE:1595353_AT similar to cytoplasmic polyadenylation element binding protein 4 cfa
CANINE_2:CFA.16401.1.S1_S_AT similar to cytoplasmic polyadenylation element binding protein 4 cfa
CANINE_2:CFAAFFX.25627.1.S1_S_AT similar to cytoplasmic polyadenylation element binding protein 4 cfa
DROSOPHILA_2:1641096_S_AT dm
DROSGENOME1:141372_AT dm
CHICKEN:GGA.5115.1.S1_S_AT similar to KIAA1673 protein gga
CHICKEN:GGAAFFX.25687.1.S1_AT similar to KIAA1673 protein gga
HU35KSUBA:RC_AA435591_AT cytoplasmic polyadenylation element binding protein 4 hs
HU35KSUBA:H20332_AT cytoplasmic polyadenylation element binding protein 4 hs
HU35KSUBA:RC_AA495924_AT cytoplasmic polyadenylation element binding protein 4 hs
HU35KSUBD:RC_AA381125_AT cytoplasmic polyadenylation element binding protein 4 hs
HU35KSUBD:RC_AA621796_AT cytoplasmic polyadenylation element binding protein 4 hs
U133_X3P:HS.301444.0.A3_3P_AT cytoplasmic polyadenylation element binding protein 4 hs
U133_X3P:HS.301444.0.A2_3P_AT cytoplasmic polyadenylation element binding protein 4 hs
U133_X3P:HS.301444.0.A1_3P_AT cytoplasmic polyadenylation element binding protein 4 hs
HG-U133_PLUS_2:224828_AT cytoplasmic polyadenylation element binding protein 4 hs
HG-U133B:224828_AT cytoplasmic polyadenylation element binding protein 4 hs
HG-U133_PLUS_2:224829_AT cytoplasmic polyadenylation element binding protein 4 hs
HG-U133B:224829_AT cytoplasmic polyadenylation element binding protein 4 hs
HG-U133_PLUS_2:224831_AT cytoplasmic polyadenylation element binding protein 4 hs
HG-U133B:224831_AT cytoplasmic polyadenylation element binding protein 4 hs
HG-U95B:44142_R_AT cytoplasmic polyadenylation element binding protein 4 hs
HG-U95C:54887_AT cytoplasmic polyadenylation element binding protein 4 hs
HG-U95B:57169_AT cytoplasmic polyadenylation element binding protein 4 hs
HG-U95D:84376_AT cytoplasmic polyadenylation element binding protein 4 hs
HG-U133B:242280_X_AT Cytoplasmic polyadenylation element binding protein 4 hs
HG-U133_PLUS_2:242280_X_AT Cytoplasmic polyadenylation element binding protein 4 hs
U133_X3P:HS.108159.0.S1_3P_X_AT Cytoplasmic polyadenylation element binding protein 4 hs
U133_X3P:HS.108159.0.S1_3P_AT Cytoplasmic polyadenylation element binding protein 4 hs
U133_X3P:242280_3P_X_AT Cytoplasmic polyadenylation element binding protein 4 hs
HG-U95B:42343_R_AT Cytoplasmic polyadenylation element binding protein 4 hs
HG-U133_PLUS_2:242384_AT Cytoplasmic polyadenylation element binding protein 4 hs
HG-U133B:242384_AT Cytoplasmic polyadenylation element binding protein 4 hs
HG-U95C:59071_AT Cytoplasmic polyadenylation element binding protein 4 hs
HG-U95E:70353_AT Cytoplasmic polyadenylation element binding protein 4 hs
HG-U95E:78000_R_AT Cytoplasmic polyadenylation element binding protein 4 hs
HU35KSUBC:RC_AA059016_AT Cytoplasmic polyadenylation element binding protein 4 hs
HU35KSUBC:RC_R99274_AT Cytoplasmic polyadenylation element binding protein 4 hs
U133_X3P:HS.165221.0.A1_3P_AT Cytoplasmic polyadenylation element binding protein 4 hs
MOE430A:1420617_AT cytoplasmic polyadenylation element binding protein 4 mm
MOUSE430A_2:1420617_AT cytoplasmic polyadenylation element binding protein 4 mm
MOUSE430_2:1420617_AT cytoplasmic polyadenylation element binding protein 4 mm
MG-U74BV2:105307_AT cytoplasmic polyadenylation element binding protein 4 mm
MG-U74CV2:134511_AT cytoplasmic polyadenylation element binding protein 4 mm
MG-U74BV2:163183_AT cytoplasmic polyadenylation element binding protein 4 mm
MOE430A:1420618_AT cytoplasmic polyadenylation element binding protein 4 mm
MOUSE430A_2:1420618_AT cytoplasmic polyadenylation element binding protein 4 mm
MOUSE430_2:1420618_AT cytoplasmic polyadenylation element binding protein 4 mm
MOE430A:1449931_AT cytoplasmic polyadenylation element binding protein 4 mm
MOUSE430A_2:1449931_AT cytoplasmic polyadenylation element binding protein 4 mm
MOUSE430_2:1449931_AT cytoplasmic polyadenylation element binding protein 4 mm
RG-U34C:RC_AA818407_AT cytoplasmic polyadenylation element binding protein 4 (predicted) rn
RAE230A:1372223_AT cytoplasmic polyadenylation element binding protein 4 (predicted) rn
RAT230_2:1372223_AT cytoplasmic polyadenylation element binding protein 4 (predicted) rn
RAE230B:1393294_AT cytoplasmic polyadenylation element binding protein 4 (predicted) rn
RAT230_2:1393294_AT cytoplasmic polyadenylation element binding protein 4 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA79552 Hypothetical protein C40H1.1 [Caenorhabditis elegans] ref|NP_499051.1| CPEB polyA binding family member (cpb-1) [Caenorhabditis elegans] sp|Q03571|CPB1_CAEEL Cytoplasmic polyadenylation element binding protein 0.0
blast AAT72429 CPB-1 [Caenorhabditis japonica] gb|AAT72412.1| CPB-1 [Caenorhabditis japonica] sp|Q6E3C7|CPB1_CAEJA Cytoplasmic polyadenylation element binding protein 1.0E-140
blast AAT72427 CPB-1 [Caenorhabditis remanei] gb|AAT72410.1| CPB-1 [Caenorhabditis remanei] sp|Q6E3C9|CPB1_CAERE Cytoplasmic polyadenylation element binding protein 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.1E-5
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.1E-5
Sequence
Target Sequence
>C. ELEGANS:192546_AT
tgacaactcttcggtcgatcatcgtcgcactgtcttcattggtggcgttcctcgtccgac
ccgtgctcaagatcttgcacgttgtcttgaaggtcactatggaaaagtgtcgtatgtggg
aattgatattgatccagagttgaaatacccaaaaggagctgcccgagtcactttctcaac
ttctcaagcatttgttcgcgccatatcgggtcgtttcgtgcaggtcaatcatgccgaaaa
taacaaacgagttgaaatcaagccgtatgtgatggaagaacaatactgtgatgagtgtga
aggaagattgtgcaagcataactatgctccatacttctgtggacatgcttcctgtcttca
atattactgtgaaggttgttgggatcgcatgcatattggaaagaatgaagataacaagct
cgaagatcagcattatccaatggtgcgcactggagatcaaacaagacttctcaagcatct
tccacatcgctcctctggttttaagcctgctccagttttccatccatctagccaatctac
tac


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TGACAACTCTTCGGTCGATCATCGT 60 573 519 Antisense
TCGCACTGTCTTCATTGGTGGCGTT 138 601 543 Antisense
GATCTTGCACGTTGTCTTGAAGGTC 571 419 589 Antisense
TACCCAAAAGGAGCTGCCCGAGTCA 201 637 664 Antisense
TCAAGCATTTGTTCGCGCCATATCG 515 631 702 Antisense
CCATATCGGGTCGTTTCGTGCAGGT 140 269 719 Antisense
CATACTTCTGTGGACATGCTTCCTG 5 215 848 Antisense
ATGCTTCCTGTCTTCAATATTACTG 432 43 863 Antisense
GAAGGTTGTTGGGATCGCATGCATA 258 335 889 Antisense
TCCTCTGGTTTTAAGCCTGCTCCAG 444 593 1009 Antisense
TCCATCCATCTAGCCAATCTACTAC 321 591 1037 Antisense
Sequence Source Affymetrix Proprietary Database