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[192544_s_at] PHD-finger. (2 domains), SET domain

Description T12D8.1 /REP_DB=WormBase Gene ID /WP=CE16398 /TR=O46025 /GB=CAB05024.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=PHD-finger. (2 domains), SET domain
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 17      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 542
1 2 3 4 range
A 955
(3)
P 		441
(-2.7)
P 		471.6
(-2.4)
P 		413.5
(-3)
P 		542
B 832.5
(3)
P 		464.3
(-2.4)
P 		423.5
(-3)
P 		478.4
(-2.2)
P 		409
C 826.7
(3)
P 		607.5
(-0.4)
P 		454.6
(-2.8)
P 		440.2
(-3)
P 		387
avr 871.4
(3) 		504.3
(-2.2) 		449.9
(-2.9) 		444
(-3) 		427

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 907
1 2 3 4 5 6 range
A 657.5
(2)
P 		737.2
(3)
P 		266.2
(-3)
P 		330
(-2.2)
P 		378.5
(-1.6)
P 		468
(-0.4)
P 		471
B 853.4
(3)
P 		634.1
(0.6)
P 		360.3
(-2.4)
P 		318.7
(-2.9)
P 		305.4
(-3)
P 		356
(-2.4)
P 		548
C 1173.4
(3)
P 		608.6
(-0.8)
P 		450.2
(-1.9)
P 		330
(-2.7)
P 		407.5
(-2.2)
P 		286.2
(-3)
P 		887
avr 894.8
(3) 		660
(0.5) 		358.9
(-2.7) 		326.2
(-3) 		363.8
(-2.6) 		370.1
(-2.5) 		569
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 347.7
(3)
P 		95.7
(-2.3)
P 		123.3
(-1.7)
P 		60.5
(-3)
P 		287
B 265.5
(3)
P 		114.7
(-2.4)
P 		98.1
(-3)
P 		101.9
(-2.9)
P 		167
C 273.7
(3)
P 		174.7
(0)
P 		158.4
(-0.5)
P 		74.2
(-3)
P 		200
avr 295.6
(3) 		128.4
(-1.6) 		126.6
(-1.7) 		78.9
(-3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 377
1 2 3 4 5 6 range
A 121.2
(-1.1)
P 		262.2
(3)
P 		58
(-3)
P 		83.7
(-2.2)
P 		114.2
(-1.3)
P 		113.9
(-1.4)
P 		204
B 296.9
(3)
P 		211.1
(0.6)
P 		87.5
(-2.9)
P 		84.4
(-3)
P 		124.1
(-1.9)
P 		132.8
(-1.6)
P 		213
C 434.9
(3)
P 		185.7
(-1.1)
P 		114.6
(-2.2)
P 		66.4
(-3)
P 		131.9
(-1.9)
P 		95.8
(-2.5)
P 		369
avr 284.3
(3) 		219.7
(1.1) 		86.7
(-2.8) 		78.2
(-3) 		123.4
(-1.7) 		114.2
(-2) 		206
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192544_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6813
Sequence Type Exemplar sequence
Representative Public ID T12D8.1 NCBI
Target Description T12D8.1 /REP_DB=WormBase Gene ID /WP=CE16398 /TR=O46025 /GB=CAB05024.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=PHD-finger. (2 domains), SET domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067418(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067418 NCBI Caenorhabditis elegans T12D8.1 (T12D8.1) mRNA, complete cds. 11/11 None
T12D8.1 ENSEMBL cdna:known chromosome:CEL140:III:13643247:13656134:1 gene:T12D8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034991 6/11 Cross Hyb Matching Probes None
GENEFINDER00000034995 3/11 Cross Hyb Matching Probes None
GENEFINDER00000041276 5/11 Cross Hyb Matching Probes None
SNAP00000041271 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13643242-13655849(+) 100.0 100.0
Public Domain and Genome References
Gene Title PHD-finger. (2 domains), SET domain
Gene Symbol tag-350
Ensembl T12D8.1
Entrez Gene 176802 Entrez gene
SwissProt O46025 EMBL-EBI
WormBase CE16398 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03348 Hypothetical protein T12D8.1 [Caenorhabditis elegans] emb|CAB05024.1| Hypothetical protein T12D8.1 [Caenorhabditis elegans] ref|NP_499819.1| T12D8.1 [Caenorhabditis elegans] 0.0
blast CAE71342 Hypothetical protein CBG18244 [Caenorhabditis briggsae] 0.0
blast XP_689363 PREDICTED: similar to myeloid/lymphoid or mixed-lineage leukemia 3 [Danio rerio] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 0.0016
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 3.8E-8
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 6.6E-11
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 4.3E-6
Pfam IPR003889 EMBL-EBI FY-rich domain, C-terminal 2.0E-37
Pfam IPR003888 EMBL-EBI FY-rich domain, N-terminal 3.1E-21
Pfam IPR001214 EMBL-EBI Nuclear protein SET 3.6E-48
Sequence
Target Sequence 
>C. ELEGANS:192544_S_AT
gggttcgatcctactataccgaggaagcggcagcgagagcccgcgccttcgggatccctc
cggaaatggcctcattgtcacttcggatggagacgacgcagaacgcgcaaacagccttct
cagcttatcagaaaatgcgtagagagtggaaggatcgagtttacctggcgagatcccgca
tcgctggacttggattatatgcgaaggttgatatctcgatgggcgattttattatcgagt
acaagggtgaaataattcgatcggaagtgtgcgaagttcgagaaattcgctacgtcgctc
aaaatcgtggtgtctacatgttccgaatcgacgaggaatgggtgatcgacgcgacgatgg
caggtggaccggcgagatatatcaaccattcgtgtgatccgaactgctcgacgcagattc
tggatgcaggctctggagctcgcgagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTTCGATCCTACTATACCGAGGA 140 497 7112 Antisense
CGGAAATGGCCTCATTGTCACTTCG 522 239 7172 Antisense
CAAACAGCCTTCTCAGCTTATCAGA 662 191 7219 Antisense
GATCGAGTTTACCTGGCGAGATCCC 58 417 7264 Antisense
ATCCCGCATCGCTGGACTTGGATTA 470 33 7284 Antisense
TCGAGAAATTCGCTACGTCGCTCAA 513 601 7389 Antisense
CGTCGCTCAAAATCGTGGTGTCTAC 97 247 7404 Antisense
TCGACGCGACGATGGCAGGTGGACC 589 601 7457 Antisense
TGTGATCCGAACTGCTCGACGCAGA 566 555 7504 Antisense
GACGCAGATTCTGGATGCAGGCTCT 320 379 7521 Antisense
TGCAGGCTCTGGAGCTCGCGAGAAG 139 577 7536 Antisense
Sequence Source Affymetrix Proprietary Database