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[192541_s_at]

Description C26B2.3 /REP_DB=WormBase Gene ID /WP=CE17474 /GEN=nhr-31 /TR=SW:Q18192 /GB=AAC24263.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 22      6grp_total > 12      4grp_total > 55      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2173
1 2 3 4 range
A 2812.1
(3)
P 		835.5
(-3)
P 		1255.1
(-1.7)
P 		979
(-2.6)
P 		1977
B 2985.1
(3)
P 		1162
(-3)
P 		1415.4
(-2.2)
P 		1279.2
(-2.6)
P 		1823
C 3008.3
(3)
P 		991.1
(-3)
P 		1242.3
(-2.3)
P 		1114.6
(-2.6)
P 		2017
avr 2935.2
(3) 		996.2
(-3) 		1304.3
(-2) 		1124.3
(-2.6) 		1939

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2158
1 2 3 4 5 6 range
A 2464.3
(2.7)
P 		2538.6
(3)
P 		1659.8
(-0.3)
P 		1592.7
(-0.5)
P 		1136.3
(-2.2)
P 		917.9
(-3)
P 		1621
B 1670
(-1.2)
P 		3075.4
(3)
P 		2234.9
(0.5)
P 		1663.5
(-1.2)
P 		1055.3
(-3)
P 		1105.2
(-2.9)
P 		2020
C 2008.8
(0.2)
P 		2852.8
(3)
P 		2349.2
(1.3)
P 		1513.7
(-1.5)
P 		1068.7
(-3)
P 		1148.7
(-2.7)
P 		1784
avr 2047.7
(0.4) 		2822.3
(3) 		2081.3
(0.5) 		1590
(-1.2) 		1086.8
(-2.9) 		1057.3
(-3) 		1765
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 881
1 2 3 4 range
A 1023.9
(3)
P 		181.4
(-2.7)
P 		328.1
(-1.7)
P 		143.3
(-3)
P 		881
B 951.9
(3)
P 		287
(-2.9)
P 		328
(-2.5)
P 		272.6
(-3)
P 		679
C 995.8
(3)
P 		285
(-2.3)
P 		433
(-1.2)
P 		187.9
(-3)
P 		808
avr 990.5
(3) 		251.1
(-2.6) 		363
(-1.8) 		201.3
(-3) 		789

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 800
1 2 3 4 5 6 range
A 454.3
(-1)
P 		902.9
(3)
P 		361.5
(-1.8)
P 		403.9
(-1.4)
P 		342.9
(-1.9)
P 		223.5
(-3)
P 		679
B 581.1
(-1.3)
P 		1023.7
(3)
P 		542.7
(-1.7)
P 		440.6
(-2.7)
P 		428.7
(-2.8)
P 		412.1
(-3)
P 		612
C 744.6
(1.7)
P 		870.5
(3)
P 		597.9
(0.1)
P 		304.4
(-3)
P 		345.8
(-2.6)
P 		384.6
(-2.1)
P 		566
avr 593.3
(-0.4) 		932.4
(3) 		500.7
(-1.4) 		383
(-2.6) 		372.5
(-2.7) 		340.1
(-3) 		592
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192541_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9526
Sequence Type Exemplar sequence
Representative Public ID C26B2.3 NCBI
Target Description C26B2.3 /REP_DB=WormBase Gene ID /WP=CE17474 /GEN=nhr-31 /TR=SW:Q18192 /GB=AAC24263.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171391(11), NM_001026158(11), NM_001026159(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171391 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-31) (nhr-31) mRNA, complete cds. 11/11 None
NM_001026158 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-31) (nhr-31) mRNA, complete cds. 11/11 None
NM_001026159 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-31) (nhr-31) mRNA, complete cds. 11/11 None
SNAP00000044204 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8023231:8026012:-1 11/11 None
GENEFINDER00000044209 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8023231:8029404:-1 11/11 None
C26B2.3b ENSEMBL cdna:known chromosome:CEL140:IV:8022651:8029465:-1 gene:C26B2.3 11/11 None
C26B2.3a.1 ENSEMBL cdna:known chromosome:CEL140:IV:8022651:8029495:-1 gene:C26B2.3 11/11 None
C26B2.3a.3 ENSEMBL cdna:known chromosome:CEL140:IV:8022651:8029497:-1 gene:C26B2.3 11/11 None
C26B2.3a.2 ENSEMBL cdna:known chromosome:CEL140:IV:8023231:8029418:-1 gene:C26B2.3 11/11 None
C26B2.3c.2 ENSEMBL cdna:known chromosome:CEL140:IV:8023231:8026019:-1 gene:C26B2.3 11/11 None
C26B2.3c.1 ENSEMBL cdna:known chromosome:CEL140:IV:8023231:8026021:-1 gene:C26B2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8023236-8029410(-) 100.0 100.0
Public Domain and Genome References
Ensembl C26B2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG15127 nuclear receptor NHR-31 [Caenorhabditis elegans] 0.0
blast AAC24263 Nuclear hormone receptor family protein 31, isoform a [Caenorhabditis elegans] ref|NP_741456.1| Nuclear Hormone Receptor family member (nhr-31) [Caenorhabditis elegans] gb|AAG15125.1| nuclear receptor NHR-31 [Caenorhabditis elegans] sp|Q18192|NHR31_CAEEL Nuclear hormone receptor family member nhr-31 0.0
blast AAG15128 nuclear receptor NHR-31 [Caenorhabditis elegans] 0.0
blast AAV34794 Nuclear hormone receptor family protein 31, isoform c [Caenorhabditis elegans] ref|NP_001021330.1| Nuclear Hormone Receptor family member (nhr-31) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.8E-19
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.0E-47
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.7E-37
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.0E-47
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.7E-37
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.0E-47
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.7E-37
Sequence
Target Sequence 
>C. ELEGANS:192541_S_AT
aaggactatccgagcatgcgaggcacgcgatttctgagttgagagataaagttcaagata
tgcttttccaaattgtcaaggagcttcatccaatctattctgcaagcagccgatttggaa
acttgttgcttcttctgccaacaattactactctttccggattgatgtctgaaaacatgc
atttctgtcaagctcttggaggacgtgcaagtggagataacttgttagctgaaatgtttg
gagatagaacatttgatgatcaacttatcagcagcagcattagcccaccactattcgaga
atccagctgaaatttgtttagagagtatctcaccgccaatgtctgatcgaagattcgtga
gaagggtagatgtggcaacacagacaaatgatgatttgttatcatctggaccatatcttc
cacattcaaattcatgtagctccatgcttaatgctggatactctcctccaatgctgtcaa
catctccattcccacttctcgatgacaatgacagtgccttccagaatgacatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGACTATCCGAGCATGCGAGGCA 54 161 1160 Antisense
CGAGGCACGCGATTTCTGAGTTGAG 625 249 1178 Antisense
AGCTTCATCCAATCTATTCTGCAAG 384 79 1241 Antisense
CATGCATTTCTGTCAAGCTCTTGGA 79 211 1335 Antisense
TTATCAGCAGCAGCATTAGCCCACC 620 677 1424 Antisense
ATTAGCCCACCACTATTCGAGAATC 585 11 1438 Antisense
TAGAGAGTATCTCACCGCCAATGTC 125 653 1478 Antisense
GACCATATCTTCCACATTCAAATTC 19 383 1568 Antisense
TTAATGCTGGATACTCTCCTCCAAT 635 683 1607 Antisense
TCCAATGCTGTCAACATCTCCATTC 506 587 1626 Antisense
GACAGTGCCTTCCAGAATGACATCA 331 369 1669 Antisense
Sequence Source Affymetrix Proprietary Database