[Home] | [Total List]

[192532_s_at] Human mRNA (KIAA0077) product like

Description C14C10.5 /REP_DB=WormBase Gene ID /WP=CE05284 /TR=Q17971 /GB=CAA98425.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human mRNA (KIAA0077) product like
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 75      6grp_total > 37      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 864
1 2 3 4 range
A 1152.6
(3)
P 		818.6
(-0.8)
P 		671.2
(-2.5)
P 		623.7
(-3)
P 		529
B 1487.3
(3)
P 		692.7
(-3)
P 		830.2
(-2)
P 		789.1
(-2.3)
P 		795
C 1213
(3)
P 		771
(-2)
P 		822.1
(-1.4)
P 		682.4
(-3)
P 		531
avr 1284.3
(3) 		760.8
(-2.4) 		774.5
(-2.2) 		698.4
(-3) 		586

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 872
1 2 3 4 5 6 range
A 859.7
(0.2)
P 		1040.6
(2.1)
P 		573.6
(-3)
P 		693
(-1.7)
P 		822.8
(-0.3)
P 		1118.5
(3)
P 		545
B 786.3
(2)
P 		694.3
(0.5)
P 		704.2
(0.6)
P 		818.8
(2.6)
P 		489.3
(-3)
P 		844.4
(3)
P 		355
C 1361.7
(3)
P 		692.3
(-3)
P 		932.1
(-0.9)
P 		695.3
(-3)
P 		818.1
(-1.9)
P 		827.8
(-1.8)
P 		669
avr 1002.6
(3) 		809.1
(-1) 		736.6
(-2.5) 		735.7
(-2.5) 		710.1
(-3) 		930.2
(1.5) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 383
1 2 3 4 range
A 419.7
(3)
P 		177.7
(-1.4)
P 		175.5
(-1.5)
P 		91.3
(-3)
P 		328
B 474.3
(3)
P 		171.1
(-2.9)
P 		192.4
(-2.5)
P 		168.2
(-3)
P 		306
C 401.5
(3)
P 		221.7
(-0.8)
P 		286.5
(0.6)
P 		115.1
(-3)
P 		286
avr 431.8
(3) 		190.2
(-1.7) 		218.1
(-1.2) 		124.9
(-3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 158.5
(-2.2)
P 		370.1
(3)
P 		124.9
(-3)
P 		175.8
(-1.8)
P 		248.3
(0)
P 		272.3
(0.6)
P 		245
B 273.6
(1.3)
P 		231.1
(-0.5)
P 		171
(-3)
P 		216.9
(-1.1)
P 		198.8
(-1.8)
P 		314.9
(3)
P 		144
C 504.7
(3)
P 		211.2
(-1.8)
P 		237.2
(-1.4)
P 		139.8
(-3)
P 		264.7
(-0.9)
P 		277.1
(-0.7)
P 		365
avr 312.3
(3) 		270.8
(1.2) 		177.7
(-3) 		177.5
(-3) 		237.3
(-0.3) 		288.1
(1.9) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192532_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12744
Sequence Type Exemplar sequence
Representative Public ID C14C10.5 NCBI
Target Description C14C10.5 /REP_DB=WormBase Gene ID /WP=CE05284 /TR=Q17971 /GB=CAA98425.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Human mRNA (KIAA0077) product like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073752(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073752 NCBI Caenorhabditis elegans C14C10.5 (C14C10.5) mRNA, complete cds. 11/11 None
SNAP00000017653 ENSEMBL cdna:SNAP chromosome:CEL140:V:12602875:12609503:1 11/11 None
GENEFINDER00000017658 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12602875:12609503:1 11/11 None
C14C10.5 ENSEMBL cdna:known chromosome:CEL140:V:12602875:12609894:1 gene:C14C10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12602874-12609503(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human mRNA (KIAA0077) product like
Ensembl C14C10.5
Entrez Gene 179726 Entrez gene
SwissProt Q17971 EMBL-EBI
WormBase CE05284 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257708_AT expressed protein at
CANINE:1604488_AT similar to proteasome (prosome, macropain) activator subunit 4 cfa
CANINE:1604324_AT similar to proteasome (prosome, macropain) activator subunit 4 cfa
CANINE:1604262_AT similar to proteasome (prosome, macropain) activator subunit 4 cfa
CANINE_2:CFA.20009.1.S1_S_AT similar to proteasome (prosome, macropain) activator subunit 4 cfa
CANINE_2:CFA.552.1.A1_AT similar to proteasome (prosome, macropain) activator subunit 4 cfa
CANINE_2:CFAAFFX.4992.1.S1_S_AT similar to proteasome (prosome, macropain) activator subunit 4 cfa
CHICKEN:GGA.5829.1.S1_AT proteasome (prosome, macropain) activator subunit 4 gga
CHICKEN:GGAAFFX.11962.1.S1_AT proteasome (prosome, macropain) activator subunit 4 gga
CHICKEN:GGAAFFX.11962.1.S1_S_AT proteasome (prosome, macropain) activator subunit 4 gga
HUGENEFL:D38521_AT proteasome (prosome, macropain) activator subunit 4 hs
U133_X3P:HS.112396.0.S3_3P_AT proteasome (prosome, macropain) activator subunit 4 hs
U133_X3P:HS.112396.0.S2_3P_AT proteasome (prosome, macropain) activator subunit 4 hs
U133_X3P:HS.112396.0.S1_3P_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U133A_2:212219_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U133_PLUS_2:212219_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U133A:212219_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U133A_2:212220_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U133_PLUS_2:212220_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U133A:212220_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U133A_2:212222_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U133_PLUS_2:212222_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U133A:212222_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U95AV2:36978_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U95B:50785_AT proteasome (prosome, macropain) activator subunit 4 hs
HG-U133_PLUS_2:237180_AT Proteasome (prosome, macropain) activator subunit 4 hs
HG-U133B:237180_AT Proteasome (prosome, macropain) activator subunit 4 hs
HG-U95C:64759_AT Proteasome (prosome, macropain) activator subunit 4 hs
HG-U95E:81392_AT Proteasome (prosome, macropain) activator subunit 4 hs
HU35KSUBC:RC_H72600_AT Proteasome (prosome, macropain) activator subunit 4 hs
HU35KSUBC:RC_N67041_AT Proteasome (prosome, macropain) activator subunit 4 hs
HU35KSUBD:RC_R08151_AT Proteasome (prosome, macropain) activator subunit 4 hs
MOUSE430_2:1446464_AT proteasome (prosome, macropain) activator subunit 4 mm
MOE430B:1446464_AT proteasome (prosome, macropain) activator subunit 4 mm
MU11KSUBA:C79507_RC_F_AT proteasome (prosome, macropain) activator subunit 4 mm
MU11KSUBA:AA222388_AT proteasome (prosome, macropain) activator subunit 4 mm
MU11KSUBB:MSA.16319.0_S_AT proteasome (prosome, macropain) activator subunit 4 mm
MG-U74AV2:104115_AT proteasome (prosome, macropain) activator subunit 4 mm
MG-U74CV2:170398_R_AT proteasome (prosome, macropain) activator subunit 4 mm
MOE430A:1426823_S_AT proteasome (prosome, macropain) activator subunit 4 mm
MOUSE430A_2:1426823_S_AT proteasome (prosome, macropain) activator subunit 4 mm
MOUSE430_2:1426823_S_AT proteasome (prosome, macropain) activator subunit 4 mm
MOE430A:1426824_AT proteasome (prosome, macropain) activator subunit 4 mm
MOUSE430A_2:1426824_AT proteasome (prosome, macropain) activator subunit 4 mm
MOUSE430_2:1426824_AT proteasome (prosome, macropain) activator subunit 4 mm
MOE430A:1452211_AT proteasome (prosome, macropain) activator subunit 4 mm
MOUSE430A_2:1452211_AT proteasome (prosome, macropain) activator subunit 4 mm
MOUSE430_2:1452211_AT proteasome (prosome, macropain) activator subunit 4 mm
MOE430B:1445147_AT proteasome (prosome, macropain) activator subunit 4 mm
MOUSE430_2:1445147_AT proteasome (prosome, macropain) activator subunit 4 mm
MG-U74BV2:105028_AT Proteasome (prosome, macropain) activator subunit 4, mRNA (cDNA clone IMAGE:4987120) mm
MOE430B:1440511_AT Proteasome (prosome, macropain) activator subunit 4, mRNA (cDNA clone IMAGE:4987120) mm
MOUSE430_2:1440511_AT Proteasome (prosome, macropain) activator subunit 4, mRNA (cDNA clone IMAGE:4987120) mm
MOUSE430_2:1444722_AT Proteasome (prosome, macropain) activator subunit 4, mRNA (cDNA clone IMAGE:4987120) mm
MOE430B:1444722_AT Proteasome (prosome, macropain) activator subunit 4, mRNA (cDNA clone IMAGE:4987120) mm
MU19KSUBB:TC29185_AT Proteasome (prosome, macropain) activator subunit 4, mRNA (cDNA clone IMAGE:4987120) mm
MU19KSUBB:TC32208_AT Proteasome (prosome, macropain) activator subunit 4, mRNA (cDNA clone IMAGE:4987120) mm
MU19KSUBB:TC34762_AT Proteasome (prosome, macropain) activator subunit 4, mRNA (cDNA clone IMAGE:4987120) mm
MU19KSUBB:TC34762_G_AT Proteasome (prosome, macropain) activator subunit 4, mRNA (cDNA clone IMAGE:4987120) mm
RG-U34A:RC_AA893664_AT proteasome (prosome, macropain) activator subunit 4 rn
RG-U34C:RC_AI104907_AT proteasome (prosome, macropain) activator subunit 4 rn
RAE230A:1368817_AT proteasome (prosome, macropain) activator subunit 4 rn
RAT230_2:1368817_AT proteasome (prosome, macropain) activator subunit 4 rn
RAE230A:1368818_AT proteasome (prosome, macropain) activator subunit 4 rn
RAT230_2:1368818_AT proteasome (prosome, macropain) activator subunit 4 rn
RAE230A:1387345_AT proteasome (prosome, macropain) activator subunit 4 rn
RAT230_2:1387345_AT proteasome (prosome, macropain) activator subunit 4 rn
Protein Similarities
Method ID Description E-Value
blast CAA98425 Hypothetical protein C14C10.5 [Caenorhabditis elegans] ref|NP_506153.1| C14C10.5 [Caenorhabditis elegans] 0.0
blast CAE63943 Hypothetical protein CBG08524 [Caenorhabditis briggsae] 0.0
blast CAI24530 proteasome (prosome, macropain) activator subunit 4 [Mus musculus] 0.0
Sequence
Target Sequence 
>C. ELEGANS:192532_S_AT
ggaggccaactacatttctccggaaaatgcgccagaagttattcgacaattccaacaact
tctttcgtctccctgttggtggaaatcaaaggttgctgccttgaaaatgctccgaatgct
tgtgttctccaacagatttgtattcaggatccatcgtgatgatatcggtatgatcctcgt
caactcactcaatgacaatcaaatcgaagttcgtgaaagagcgacagatgccctaagtac
acttcttcaagctaaattcttcgagacaacaccagaacttgttaccaaattcagtacagc
tgcccattcaaaagatcaaattcaagggcatgctggtgttctcggattgtcagctattgt
gctagcttttccatactctgttccagagtttctcccgggagtcctaatgactatttgtcg
gtttgccactgacaagagtgccacaatacgggaagctgtaaaacgtactctttcggagtt
caaacgtactcatcaagattcgtggcgtgagcatgagcaacaattcaacgaggatcaact
catggtgctccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGCCAACTACATTTCTCCGGAA 669 489 5154 Antisense
CTTTCGTCTCCCTGTTGGTGGAAAT 190 195 5215 Antisense
GGTTGCTGCCTTGAAAATGCTCCGA 51 507 5244 Antisense
AAATGCTCCGAATGCTTGTGTTCTC 300 119 5258 Antisense
ATATCGGTATGATCCTCGTCAACTC 243 21 5315 Antisense
GCGACAGATGCCCTAAGTACACTTC 455 289 5374 Antisense
AATTCAGTACAGCTGCCCATTCAAA 430 175 5441 Antisense
TGGTGTTCTCGGATTGTCAGCTATT 470 553 5487 Antisense
GAGTTTCTCCCGGGAGTCCTAATGA 662 397 5539 Antisense
GACTATTTGTCGGTTTGCCACTGAC 670 371 5562 Antisense
CGAGGATCAACTCATGGTGCTCCGA 480 249 5682 Antisense
Sequence Source Affymetrix Proprietary Database