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[192528_at] sodium/phosphate transport protein

Description C35A5.3 /REP_DB=WormBase Gene ID /WP=CE05361 /TR=Q18472 /GB=CAA94906.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sodium-phosphate transport protein
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 88      6grp_total > 85      4grp_total > 05      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 622
1 2 3 4 range
A 717.3
(-1)
P 		551.4
(-3)
P 		575.9
(-2.7)
P 		1061
(3)
P 		510
B 808.3
(-0)
P 		547.1
(-3)
P 		687.7
(-1.4)
P 		1074.6
(3)
P 		528
C 738.9
(-0.9)
P 		518
(-3)
P 		601.5
(-2.2)
P 		1140.4
(3)
P 		622
avr 754.8
(-0.7) 		538.8
(-3) 		621.7
(-2.1) 		1092
(3) 		553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1520
1 2 3 4 5 6 range
A 704.3
(-3)
P 		878.2
(-2)
P 		1371.6
(0.7)
P 		1793
(3)
P 		1283.9
(0.2)
P 		1661.8
(2.3)
P 		1089
B 617.5
(-3)
P 		1029.7
(-0.9)
P 		1001.7
(-1)
P 		1746.8
(2.8)
P 		1513.2
(1.6)
P 		1785.3
(3)
P 		1168
C 539.9
(-3)
P 		1046.3
(-1)
P 		1142.4
(-0.6)
P 		1828.7
(2.1)
P 		1264.8
(-0.1)
P 		2060.2
(3)
P 		1520
avr 620.6
(-3) 		984.7
(-1.2) 		1171.9
(-0.3) 		1789.5
(2.8) 		1354
(0.6) 		1835.8
(3) 		1215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 261.2
(3)
P 		119.7
(-3)
P 		150.6
(-1.7)
P 		155.3
(-1.5)
P 		142
B 257.8
(3)
P 		135.1
(-3)
P 		159.4
(-1.8)
P 		229
(1.6)
P 		123
C 244.6
(3)
P 		148.9
(-3)
P 		209.6
(0.8)
P 		192.3
(-0.3)
P 		96
avr 254.5
(3) 		134.6
(-3) 		173.2
(-1.1) 		192.2
(-0.1) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 560
1 2 3 4 5 6 range
A 129.8
(-3)
P 		312.3
(0.4)
P 		298.7
(0.1)
P 		454.7
(3)
P 		387.4
(1.8)
P 		404.6
(2.1)
P 		325
B 214.8
(-3)
P 		342.8
(-1.3)
P 		243.2
(-2.6)
P 		462.7
(0.3)
P 		614.8
(2.3)
P 		665.7
(3)
P 		451
C 200.1
(-3)
P 		319.3
(-1.5)
P 		290.8
(-1.9)
P 		367.8
(-0.9)
P 		409.3
(-0.4)
P 		689.7
(3)
P 		490
avr 181.6
(-3) 		324.8
(-0.9) 		277.6
(-1.6) 		428.4
(0.7) 		470.5
(1.3) 		586.7
(3) 		405
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192528_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11588
Sequence Type Exemplar sequence
Representative Public ID C35A5.3 NCBI
Target Description C35A5.3 /REP_DB=WormBase Gene ID /WP=CE05361 /TR=Q18472 /GB=CAA94906.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sodium-phosphate transport protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073293 NCBI Caenorhabditis elegans C35A5.3 (C35A5.3) mRNA, complete cds. 11/11 None
SNAP00000025024 ENSEMBL cdna:SNAP chromosome:CEL140:V:10502068:10503977:-1 9/11 None
GENEFINDER00000025050 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10502068:10503977:-1 11/11 None
C35A5.3 ENSEMBL cdna:known chromosome:CEL140:V:10502096:10503979:-1 gene:C35A5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10502095-10505609(-) 98.44 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transport protein
Ensembl C35A5.3
Entrez Gene 179465 Entrez gene
SwissProt Q18472 EMBL-EBI
WormBase CE37880 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94906 Hypothetical protein C35A5.3 [Caenorhabditis elegans] ref|NP_505694.2| C35A5.3 [Caenorhabditis elegans] 0.0
blast CAE64803 Hypothetical protein CBG09596 [Caenorhabditis briggsae] 0.0
blast CAE64803 Hypothetical protein CBG09596 [Caenorhabditis briggsae] 1.0E-172
blast CAE64803 Hypothetical protein CBG09596 [Caenorhabditis briggsae] 1.0E-164
blast AAD56301 Hypothetical protein T22F3.11a [Caenorhabditis elegans] ref|NP_504015.1| T22F3.11a [Caenorhabditis elegans] 1.0E-152
blast AAD56301 Hypothetical protein T22F3.11a [Caenorhabditis elegans] ref|NP_504015.1| T22F3.11a [Caenorhabditis elegans] 1.0E-145
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505694.2 12 12-34,66-87,94-113,128-147,154-176,186-205,248-270,285-307,319-341,346-368,381-403,413-435
C35A5.3 12 12-34,66-87,94-113,128-147,154-176,186-205,248-270,285-307,319-341,346-368,381-403,413-435
SNAP00000025024 10 12-34,66-87,94-113,128-147,154-176,186-205,250-272,287-306,318-340,355-377
GENEFINDER00000025050 12 12-34,66-87,94-113,128-147,154-176,186-205,248-270,285-307,319-341,346-368,381-403,413-435
Sequence
Target Sequence 
>C. ELEGANS:192528_AT
gactgccgttatattttttgccacttacatgccgatatatctccatcaagttcttaaata
ctcggtacaagaaaccggtttttacgtagctgttattttaggtttcaatattccactaag
actggtatcggccgcattcagcgacagaattacgtttgtctctgaaaaatggaaaattat
aatttttaacactatttccgtcggagtatctggtcttacacttgcactagttggatttat
tccatcagaagaaaattggaaaagttttatttgcattgtgatggttatgatgtttgttgc
tgttaatgttggaggattttataaatgtgcagctcttcacgcgagacagcatgctcatgt
tgtaattgctgcaattcaattcactaaatgccttgcactgttctcagctcctgctgtggt
tgcattctttgtagaaacagaatcgaatagagaggaatggattccagtttttgttagttt
gggagtttctatgtttattgtgagttcaatgttgaaattcaaatttaaatcaaattatta
cccaggcaaacgcaatatcagtttttatattcacggaccagccagcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGCCGTTATATTTTTTGCCACT 95 375 1182 Antisense
TTTTTGCCACTTACATGCCGATATA 283 675 1196 Antisense
GCCGATATATCTCCATCAAGTTCTT 309 283 1212 Antisense
CTAAGACTGGTATCGGCCGCATTCA 195 225 1297 Antisense
ATTTCCGTCGGAGTATCTGGTCTTA 499 17 1375 Antisense
TATCTGGTCTTACACTTGCACTAGT 634 645 1388 Antisense
TAAATGTGCAGCTCTTCACGCGAGA 361 639 1503 Antisense
TCACGCGAGACAGCATGCTCATGTT 137 625 1518 Antisense
TAAATGCCTTGCACTGTTCTCAGCT 438 641 1566 Antisense
CTCCTGCTGTGGTTGCATTCTTTGT 344 235 1589 Antisense
TTATATTCACGGACCAGCCAGCATC 600 677 1746 Antisense
Sequence Source Affymetrix Proprietary Database