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[192527_s_at]

Description C41G7.1 /REP_DB=WormBase Gene ID /WP=CE08665 /CHR=1 /FEA=Sanger Annotation /DEF=Human muscular atrophy protein like (HINXTON) TR:Q93365 protein_id:CAB02838.1
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 89      4grp_highest_8_8 > 40      4grp_high_8_8 > 42      6grp_highest_nonorm > 82      6grp_total > 89      4grp_total > 53      6grp_highest_sub > Da      6grp_cgc > 59      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 306.5
(3)
P 		239.5
(-2.4)
P 		299.5
(2.4)
P 		232.3
(-3)
P 		74
B 280.8
(-2.2)
P 		421.3
(3)
P 		260.5
(-3)
P 		263.5
(-2.9)
P 		161
C 456.1
(3)
P 		309.3
(-0.9)
P 		314
(-0.8)
P 		232.9
(-3)
P 		223
avr 347.8
(3) 		323.4
(1.6) 		291.3
(-0.2) 		242.9
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 242.8
(-1.5)
P 		292.6
(0.8)
P 		228.1
(-2.2)
P 		210.1
(-3)
P 		340.5
(3)
P 		328.3
(2.4)
P 		130
B 327.4
(-0.7)
P 		319.1
(-1)
P 		263.3
(-3)
P 		290
(-2)
P 		405.5
(2.2)
P 		427.8
(3)
P 		165
C 320.2
(0.2)
P 		202.5
(-3)
P 		385.8
(2)
P 		289.6
(-0.6)
P 		329.3
(0.5)
P 		423
(3)
P 		221
avr 296.8
(-1.4) 		271.4
(-2.6) 		292.4
(-1.7) 		263.2
(-3) 		358.4
(1.4) 		393
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 111.6
(3)
P 		52
(-1.6)
P 		78.3
(0.4)
P 		34
(-3)
P 		78
B 89.5
(1.2)
P 		104.1
(3)
P 		60.4
(-2.5)
P 		56.2
(-3)
P 		48
C 151
(3)
P 		88.9
(-0.3)
P 		109.4
(0.8)
P 		39.3
(-3)
P 		112
avr 117.4
(3) 		81.7
(0.1) 		82.7
(0.2) 		43.2
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 44.8
(-3)
P 		104.1
(3)
P 		49.7
(-2.5)
P 		53.3
(-2.1)
P 		102.8
(2.9)
P 		79.9
(0.6)
P 		59
B 113.9
(-0)
P 		106.2
(-0.5)
P 		63.9
(-3)
P 		76.8
(-2.2)
P 		164.7
(3)
P 		159.5
(2.7)
P 		101
C 118.7
(1.4)
P 		61.8
(-2.7)
P 		98.2
(-0.1)
P 		58.2
(-3)
P 		106.6
(0.5)
P 		141.6
(3)
P 		83
avr 92.5
(-0.2) 		90.7
(-0.4) 		70.6
(-2.3) 		62.8
(-3) 		124.7
(2.8) 		127
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192527_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2372
Sequence Type Exemplar sequence
Representative Public ID C41G7.1 NCBI
Target Description C41G7.1 /REP_DB=WormBase Gene ID /WP=CE08665 /CHR=1 /FEA=Sanger Annotation /DEF=Human muscular atrophy protein like (HINXTON) TR:Q93365 protein_id:CAB02838.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060124(11), NM_001025863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060124 NCBI Caenorhabditis elegans SMN (human Survival Motor Neuron gene) homolog family member (smn-1) (smn-1) mRNA, complete cds. 11/11 None
NM_001025863 NCBI Caenorhabditis elegans SMN (human Survival Motor Neuron gene) homolog family member (smn-1) (smn-1) mRNA, complete cds. 11/11 None
SNAP00000008713 ENSEMBL cdna:SNAP chromosome:CEL140:I:9519406:9520137:-1 11/11 None
GENEFINDER00000008724 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9519406:9520221:-1 11/11 None
C41G7.1b ENSEMBL cdna:known chromosome:CEL140:I:9519310:9520224:-1 gene:C41G7.1 11/11 None
C41G7.1a ENSEMBL cdna:known chromosome:CEL140:I:9519406:9520137:-1 gene:C41G7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9519336-9520068(-) 100.0 100.0
Public Domain and Genome References
Ensembl C41G7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42273 Hypothetical protein C41G7.1b [Caenorhabditis elegans] ref|NP_001021034.1| SMN (human Survival Motor Neuron gene) homolog family member (smn-1) [Caenorhabditis elegans] gb|AAF00192.1| survival motor neuron protein [Caenorhabditis elegans] 1.0E-108
blast CAC42273 Hypothetical protein C41G7.1b [Caenorhabditis elegans] ref|NP_001021034.1| SMN (human Survival Motor Neuron gene) homolog family member (smn-1) [Caenorhabditis elegans] gb|AAF00192.1| survival motor neuron protein [Caenorhabditis elegans] 1.0E-102
blast CAB02838 Hypothetical protein C41G7.1a [Caenorhabditis elegans] ref|NP_492525.2| SMN (human Survival Motor Neuron gene) homolog family member (smn-1) [Caenorhabditis elegans] emb|CAB41945.1| SMN protein [Caenorhabditis elegans] 1.0E-102
Sequence
Target Sequence 
>C. ELEGANS:192527_S_AT
gatgtttgggatgatacggagctaatcaaaatgtatgatgaatcgcttcaagaaatttct
aaaaatgagacatctgctaaaattacttcaagaaaattcaaaggagaagatggaaaaatg
tacacatggaaagttggtgggaaatgtatggctccatatgaagaaaacggggaggtcact
gattatcctgcaacaattgatactattggaggtgctgataatctcgaagttggagttact
ttcatttattatggaggtcaagcagttgtacaaatgaaagatctctggttgaatgaagaa
gctattgcggacgctgtgaaagctgaaaatgatcttcaaaagacaaaaaagacatcaact
gtaaattcagtagcacattcaaattcaaaatctacctcatctgcaccaaatacctcgatg
ccatttccatccttcgcaccgccagttcctccaaacataatcgcaatggcccctgttaat
cagaaagaagccatgaacagtatgcttatgagctggtacatgagcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTTGGGATGATACGGAGCTAA 325 409 25 Antisense
GAGACATCTGCTAAAATTACTTCAA 515 393 91 Antisense
GGGAGGTCACTGATTATCCTGCAAC 702 495 194 Antisense
GGAGGTGCTGATAATCTCGAAGTTG 671 515 232 Antisense
GTTGGAGTTACTTTCATTTATTATG 112 437 253 Antisense
GAAGAAGCTATTGCGGACGCTGTGA 11 341 319 Antisense
TTCAAATTCAAAATCTACCTCATCT 31 687 402 Antisense
ATCTGCACCAAATACCTCGATGCCA 695 31 423 Antisense
GCCAGTTCCTCCAAACATAATCGCA 287 279 465 Antisense
TCGCAATGGCCCCTGTTAATCAGAA 591 599 485 Antisense
GCTTATGAGCTGGTACATGAGCGGA 617 303 528 Antisense
Sequence Source Affymetrix Proprietary Database