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[192525_at] Zinc finger, C4 type (two domains)

Description F14H3.11 /REP_DB=WormBase Gene ID /WP=CE15835 /TR=O45365 /GB=CAB05485.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 80      4grp_total > 02      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 23.9
(-3)
A 		66.8
(1)
A 		42.9
(-1.2)
A 		88.6
(3)
A 		65
B 46
(-0.6)
A 		18.9
(-3)
A 		56.2
(0.2)
A 		87.8
(3)
A 		69
C 62.9
(-1.8)
A 		50.1
(-2.8)
A 		46.7
(-3)
A 		128.7
(3)
P 		82
avr 44.3
(-3) 		45.3
(-2.9) 		48.6
(-2.6) 		101.7
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 44.1
(-2.1)
A 		47.4
(-1.5)
A 		64.1
(1.3)
M 		71.6
(2.6)
P 		38.5
(-3)
A 		73.9
(3)
A 		35
B 35.9
(-3)
A 		78.6
(0.3)
A 		62.9
(-0.9)
M 		88.4
(1)
A 		114.6
(3)
A 		104.2
(2.2)
P 		79
C 44.3
(-2.2)
A 		109.2
(-0.4)
P 		17.5
(-3)
A 		229.7
(3)
P 		89.2
(-1)
A 		104.7
(-0.5)
A 		212
avr 41.4
(-3) 		78.4
(-0.5) 		48.2
(-2.5) 		129.9
(3) 		80.8
(-0.3) 		94.3
(0.6) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.7
(-3)
A 		14.5
(3)
A 		11.2
(-0.4)
A 		13
(1.4)
A 		6
B 14.7
(1.3)
A 		4.7
(-3)
A 		13
(0.6)
A 		18.7
(3)
A 		14
C 20.8
(2.3)
A 		14.4
(-3)
A 		16.3
(-1.4)
A 		21.7
(3)
P 		7
avr 14.7
(0.2) 		11.2
(-3) 		13.5
(-0.9) 		17.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 8.1
(-3)
A 		16.8
(2.2)
A 		14
(0.5)
M 		18.2
(3)
P 		11.6
(-0.9)
A 		18
(2.9)
A 		10
B 12.5
(-3)
A 		26.2
(-0.6)
A 		15.3
(-2.5)
M 		23.4
(-1.1)
A 		46.5
(3)
A 		38.9
(1.7)
P 		34
C 16.4
(-1.3)
A 		33.3
(1.1)
P 		4.5
(-3)
A 		46.2
(3)
P 		28.8
(0.5)
A 		35.1
(1.4)
A 		42
avr 12.3
(-2.7) 		25.4
(1.4) 		11.3
(-3) 		29.3
(2.6) 		29
(2.5) 		30.7
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192525_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13428
Sequence Type Exemplar sequence
Representative Public ID F14H3.11 NCBI
Target Description F14H3.11 /REP_DB=WormBase Gene ID /WP=CE15835 /TR=O45365 /GB=CAB05485.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074644
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000013838 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16074033:16075267:1 None
NM_074644 NCBI Caenorhabditis elegans F14H3.11 (F14H3.11) mRNA, complete cds. None
F14H3.11 ENSEMBL cdna:known chromosome:CEL140:V:16074033:16075267:1 gene:F14H3.11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16074032-16074927(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-176
Ensembl F14H3.11
Entrez Gene 184496 Entrez gene
SwissProt O45365 EMBL-EBI
WormBase CE35482 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05485 Hypothetical protein F14H3.11 [Caenorhabditis elegans] ref|NP_507045.2| F14H3.11 [Caenorhabditis elegans] 0.0
blast CAB04290 Hypothetical protein F35E8.12 [Caenorhabditis elegans] ref|NP_506987.1| Nuclear Hormone Receptor family member (nhr-108) [Caenorhabditis elegans] gb|AAO39197.1| nuclear receptor NHR-108 [Caenorhabditis elegans] 7.0E-89
blast CAB04290 Hypothetical protein F35E8.12 [Caenorhabditis elegans] ref|NP_506987.1| Nuclear Hormone Receptor family member (nhr-108) [Caenorhabditis elegans] gb|AAO39197.1| nuclear receptor NHR-108 [Caenorhabditis elegans] 8.0E-80
blast NP_503460 Y46H3D.6 [Caenorhabditis elegans] gb|AAK72309.1| Hypothetical protein Y46H3D.6 [Caenorhabditis elegans] 6.0E-57
blast AAC25857 Nuclear hormone receptor family protein 42 [Caenorhabditis elegans] ref|NP_504771.1| Nuclear Hormone Receptor family member (nhr-42) [Caenorhabditis elegans] sp|O76828|NHR42_CAEEL Nuclear hormone receptor family member nhr-42 1.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.5E-7
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.2E-9
Sequence
Target Sequence 
>C. ELEGANS:192525_AT
aaggcgatttattccatttcaaactttgaaaaaagtattttggaagaactagaagaagcc
tatagtaaactggaacatgggaggaacgaaactttcaatccaaagagtgattcgaatcca
aaattttgcagtcacgaggagcttaataacacttgtacaattgatatacaaataatactt
gacaacttgatttcatatttccaagctaaaaagccaatgggaaaagagcaagatgatgtg
ctcaaaatgcattttatcgttccatttgtattgtttgacactgcgtttagagcaatcggt
gggagtttttttgtgaccttcatttttaaaaaagtagtttacattctatttttggaggga
aatcatcttacatatcacctgacgggaccatgtttggtggctcttatgtggaaaaactct
atcaagattcttcgaattccaaaattggggttaataacggaaaaacgtcacgagagtagg
tctcccatgatctttaacactcaacgctacttatttcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCGATTTATTCCATTTCAAACT 237 161 262 Antisense
ATTTTGCAGTCACGAGGAGCTTAAT 606 11 384 Antisense
TATCGTTCCATTTGTATTGTTTGAC 304 659 516 Antisense
GACACTGCGTTTAGAGCAATCGGTG 16 367 538 Antisense
GTGGGAGTTTTTTTGTGACCTTCAT 575 487 560 Antisense
GGGAAATCATCTTACATATCACCTG 453 493 618 Antisense
ATATCACCTGACGGGACCATGTTTG 198 21 633 Antisense
ATGTTTGGTGGCTCTTATGTGGAAA 576 47 651 Antisense
AACGTCACGAGAGTAGGTCTCCCAT 679 141 725 Antisense
TAGGTCTCCCATGATCTTTAACACT 548 653 738 Antisense
AACACTCAACGCTACTTATTTCAGA 353 135 757 Antisense
Sequence Source Affymetrix Proprietary Database