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[192524_s_at] O-sialoglycoprotein endopeptidase

Description C01G10.10 /REP_DB=WormBase Gene ID /WP=CE20480 /TR=Q93170 /GB=CAB02716.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=O-sialoglycoprotein endopeptidase
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 37      4grp_high_8_8 > 0      6grp_highest_nonorm > 91      6grp_total > 63      4grp_total > 07      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 198.6
(3)
P 		103.4
(-3)
P 		161
(0.6)
P 		195.9
(2.8)
P 		95
B 163.5
(3)
P 		140.7
(-2.9)
P 		161.1
(2.4)
P 		140.5
(-3)
P 		23
C 144.6
(-2)
P 		132.7
(-3)
P 		165.1
(-0.3)
P 		204.4
(3)
P 		72
avr 168.9
(1.7) 		125.6
(-3) 		162.4
(1) 		180.3
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 205.8
(-2.4)
P 		201.5
(-3)
P 		202.3
(-2.9)
P 		243.3
(2.6)
P 		219.8
(-0.6)
P 		246.5
(3)
P 		45
B 158.8
(-2.3)
P 		149.5
(-3)
P 		226.6
(3)
P 		168.7
(-1.5)
P 		169.8
(-1.4)
P 		183.6
(-0.3)
P 		77
C 169.5
(-3)
P 		223.7
(0.5)
P 		262.1
(3)
P 		240.4
(1.6)
P 		237.1
(1.4)
P 		197.9
(-1.2)
P 		93
avr 178
(-3) 		191.6
(-1.4) 		230.3
(3) 		217.5
(1.5) 		208.9
(0.5) 		209.3
(0.6) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 72.3
(3)
P 		22.4
(-3)
P 		42.1
(-0.6)
P 		28.7
(-2.2)
P 		50
B 52.1
(3)
P 		34.7
(-1.7)
P 		37.3
(-1)
P 		29.9
(-3)
P 		22
C 47.9
(0.5)
P 		38.2
(-2)
P 		57.5
(3)
P 		34.5
(-3)
P 		23
avr 57.4
(3) 		31.8
(-2.8) 		45.6
(0.3) 		31
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 37.9
(-3)
P 		71.7
(3)
P 		44.1
(-1.9)
P 		61.7
(1.2)
P 		66.3
(2)
P 		60
(0.9)
P 		34
B 55.3
(-0.4)
P 		49.8
(-1.7)
P 		55
(-0.5)
P 		44.7
(-3)
P 		69
(3)
P 		68.5
(2.9)
P 		24
C 62.8
(0.1)
P 		68.3
(1.2)
P 		66.7
(0.9)
P 		48.3
(-3)
P 		76.7
(3)
P 		66.3
(0.8)
P 		28
avr 52
(-2.9) 		63.3
(0.7) 		55.3
(-1.8) 		51.6
(-3) 		70.7
(3) 		64.9
(1.2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192524_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12698
Sequence Type Exemplar sequence
Representative Public ID C01G10.10 NCBI
Target Description C01G10.10 /REP_DB=WormBase Gene ID /WP=CE20480 /TR=Q93170 /GB=CAB02716.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=O-sialoglycoprotein endopeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074312(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074312 NCBI Caenorhabditis elegans C01G10.10 (C01G10.10) mRNA, complete cds. 11/11 None
C01G10.10 ENSEMBL cdna:known chromosome:CEL140:V:15082752:15085025:-1 gene:C01G10.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004618 8/11 Cross Hyb Matching Probes None
GENEFINDER00000004641 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15082753-15085006(-) 100.0 100.0
Public Domain and Genome References
Gene Title O-sialoglycoprotein endopeptidase
Ensembl C01G10.10
Entrez Gene 180015 Entrez gene
SwissProt Q93170 EMBL-EBI
WormBase CE20480 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245142_AT glycoprotease M22 family protein at
CANINE:1605155_AT similar to O-sialoglycoprotein endopeptidase-like 1 cfa
CANINE_2:CFA.20324.1.S1_AT similar to O-sialoglycoprotein endopeptidase-like 1 cfa
CANINE_2:CFAAFFX.14794.1.S1_AT similar to O-sialoglycoprotein endopeptidase-like 1 cfa
DROSOPHILA_2:1625796_AT dm
DROSGENOME1:154795_AT dm
CHICKEN:GGA.5350.1.S1_A_AT O-sialoglycoprotein endopeptidase-like 1 gga
CHICKEN:GGA.5350.1.S1_AT O-sialoglycoprotein endopeptidase-like 1 gga
CHICKEN:GGA.5350.2.S1_AT O-sialoglycoprotein endopeptidase-like 1 gga
HG-U133_PLUS_2:220631_AT O-sialoglycoprotein endopeptidase-like 1 hs
HG-U133A:220631_AT O-sialoglycoprotein endopeptidase-like 1 hs
HG-FOCUS:220631_AT O-sialoglycoprotein endopeptidase-like 1 hs
HG-U133A_2:220631_AT O-sialoglycoprotein endopeptidase-like 1 hs
HU35KSUBB:RC_R35253_AT O-sialoglycoprotein endopeptidase-like 1 hs
U133_X3P:G11641264_3P_AT O-sialoglycoprotein endopeptidase-like 1 hs
U133_X3P:HS.24944.0.A1_3P_AT O-sialoglycoprotein endopeptidase-like 1 hs
HG-U133_PLUS_2:230032_AT O-sialoglycoprotein endopeptidase-like 1 hs
HG-U133B:230032_AT O-sialoglycoprotein endopeptidase-like 1 hs
HG-U95C:64160_AT O-sialoglycoprotein endopeptidase-like 1 hs
HG-U95D:87056_AT O-sialoglycoprotein endopeptidase-like 1 hs
MG-U74BV2:113902_AT O-sialoglycoprotein endopeptidase-like 1 mm
MG-U74BV2:110826_AT O-sialoglycoprotein endopeptidase-like 1 mm
MG-U74BV2:113903_AT O-sialoglycoprotein endopeptidase-like 1 mm
MOE430B:1428557_A_AT O-sialoglycoprotein endopeptidase-like 1 mm
MOUSE430_2:1428557_A_AT O-sialoglycoprotein endopeptidase-like 1 mm
MOE430B:1428558_AT O-sialoglycoprotein endopeptidase-like 1 mm
MOUSE430_2:1428558_AT O-sialoglycoprotein endopeptidase-like 1 mm
MOE430B:1435127_A_AT O-sialoglycoprotein endopeptidase-like 1 mm
MOUSE430_2:1435127_A_AT O-sialoglycoprotein endopeptidase-like 1 mm
MU19KSUBC:TC38330_AT O-sialoglycoprotein endopeptidase-like 1 (Osgepl1), mRNA mm
RAE230B:1384382_AT O-sialoglycoprotein endopeptidase-like 1 (predicted) rn
RAT230_2:1384382_AT O-sialoglycoprotein endopeptidase-like 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8450 O-sialoglycoprotein endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02716 Hypothetical protein C01G10.10 [Caenorhabditis elegans] ref|NP_506713.1| C01G10.10 [Caenorhabditis elegans] 0.0
blast CAE66322 Hypothetical protein CBG11573 [Caenorhabditis briggsae] 1.0E-167
blast AAH97950 O-sialoglycoprotein endopeptidase-like 1 [Rattus norvegicus] ref|NP_001019958.1| O-sialoglycoprotein endopeptidase-like 1 [Rattus norvegicus] 3.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR000905 EMBL-EBI Peptidase M22, glycoprotease 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192524_S_AT
ctagagcctctgctgatggccatttgagatatcccatatttcttccaaacgttccaaaag
ctaatatgaacttcgatcaaatcaaaggatcctatctgaatttgctggaaagattgagaa
aaaactctgaaacatcaattgatattccagatttttgtgctagccttcagaacaccgtag
cccgacatatctcgagcaaacttcacatcttcttcgaaagtctctccgagcaggaaaaac
ttccaaaacagctggtgatcggcggcggagtggcggcgaatcagtacatttttggagcaa
tctcaaaactatcagctgctcacaatgtcacaaccatcaaagtcctcttgtccctttgca
cagacaatgccgaaatgatcgcctacagtggccttctgatgctcgtcaatcgatcggagg
caatttggtggcgaccgaatgacattcctgacacaatttatgcacacgctagaagcgata
ttgggacggatgcttcttcggaaatcattgatacaccgcgtcggaaactggtgacatcca
cgatccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAGAGCCTCTGCTGATGGCCATTT 696 223 659 Antisense
TTGTGCTAGCCTTCAGAACACCGTA 181 707 813 Antisense
GTAGCCCGACATATCTCGAGCAAAC 580 457 835 Antisense
GAGCAAACTTCACATCTTCTTCGAA 539 389 852 Antisense
CTTCTTCGAAAGTCTCTCCGAGCAG 595 221 867 Antisense
TCAGCTGCTCACAATGTCACAACCA 518 625 970 Antisense
AAATGATCGCCTACAGTGGCCTTCT 17 121 1031 Antisense
GCCTTCTGATGCTCGTCAATCGATC 672 281 1049 Antisense
TATTGGGACGGATGCTTCTTCGGAA 700 661 1137 Antisense
AAATCATTGATACACCGCGTCGGAA 112 117 1160 Antisense
GAAACTGGTGACATCCACGATCCAT 669 357 1182 Antisense
Sequence Source Affymetrix Proprietary Database