[Home] | [Total List]

[192522_s_at] polyadenylate-binding protein like

Description B0035.12 /REP_DB=WormBase Gene ID /WP=CE05167 /TR=Q17430 /GB=CAA97405.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=polyadenylate-binding protein like
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 95      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 95      6grp_total > 75      4grp_total > 62      6grp_highest_sub > In      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 634.3
(3)
P 		523.6
(0.7)
P 		611.1
(2.5)
P 		345.7
(-3)
P 		289
B 786.5
(3)
P 		405.9
(-3)
P 		603.1
(0.1)
P 		428
(-2.7)
P 		381
C 619.8
(3)
P 		502.7
(0.4)
P 		593.1
(2.4)
P 		346.3
(-3)
P 		274
avr 680.2
(3) 		477.4
(-1) 		602.4
(1.5) 		373.3
(-3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 620
1 2 3 4 5 6 range
A 415.5
(-3)
P 		663
(-0.2)
P 		547.1
(-1.5)
P 		873.1
(2.1)
P 		752.4
(0.8)
P 		954
(3)
P 		539
B 492.5
(-3)
P 		667.8
(-1.1)
P 		564.6
(-2.2)
P 		866.3
(1.1)
P 		628.2
(-1.5)
P 		1035.9
(3)
P 		543
C 499.2
(-3)
P 		706.8
(-0.4)
P 		643
(-1.2)
P 		830
(1.1)
P 		544.8
(-2.4)
P 		979.9
(3)
P 		481
avr 469.1
(-3) 		679.2
(-0.6) 		584.9
(-1.7) 		856.5
(1.5) 		641.8
(-1) 		989.9
(3) 		521
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 231
(3)
P 		113.7
(-0.9)
P 		159.8
(0.6)
P 		50.6
(-3)
P 		180
B 250.8
(3)
P 		100.3
(-2.7)
P 		139.7
(-1.2)
P 		91.2
(-3)
P 		160
C 205.2
(2.9)
P 		144.5
(0.5)
P 		206.7
(3)
P 		58.4
(-3)
P 		148
avr 229
(3) 		119.5
(-1) 		168.7
(0.8) 		66.7
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 76.6
(-3)
P 		235.8
(3)
P 		119.1
(-1.4)
P 		221.5
(2.5)
P 		227
(2.7)
P 		232.3
(2.9)
P 		159
B 171.4
(-2.2)
P 		222.3
(-0.9)
P 		137.1
(-3)
P 		229.4
(-0.8)
P 		255.2
(-0.2)
P 		386.3
(3)
P 		249
C 185
(-2.2)
P 		215.7
(-1.1)
P 		163.6
(-3)
P 		166.9
(-2.9)
P 		176.3
(-2.5)
P 		328
(3)
P 		164
avr 144.3
(-2.8) 		224.6
(-0.1) 		139.9
(-3) 		205.9
(-0.7) 		219.5
(-0.3) 		315.5
(3) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192522_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8647
Sequence Type Exemplar sequence
Representative Public ID B0035.12 NCBI
Target Description B0035.12 /REP_DB=WormBase Gene ID /WP=CE05167 /TR=Q17430 /GB=CAA97405.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=polyadenylate-binding protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069735(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069735 NCBI Caenorhabditis elegans B0035.12 (B0035.12) mRNA, complete cds. 11/11 None
SNAP00000035842 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11329735:11332842:-1 11/11 None
GENEFINDER00000035858 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11329735:11332842:-1 11/11 None
B0035.12.1 ENSEMBL cdna:known chromosome:CEL140:IV:11329463:11332915:-1 gene:B0035.12 11/11 None
B0035.12.2 ENSEMBL cdna:known chromosome:CEL140:IV:11329513:11332863:-1 gene:B0035.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11329740-11332848(-) 100.0 100.0
Public Domain and Genome References
Gene Title polyadenylate-binding protein like
Ensembl B0035.12
Entrez Gene 178053 Entrez gene
SwissProt Q17430 EMBL-EBI
WormBase CE05167 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254147_AT RNA recognition motif (RRM)-containing protein at
CANINE:1604928_AT similar to squamous cell carcinoma antigen recognized by T cells 3 cfa
CANINE:1586629_AT similar to squamous cell carcinoma antigen recognized by T cells 3 cfa
CANINE_2:CFA.15634.1.A1_AT similar to squamous cell carcinoma antigen recognized by T cells 3 cfa
CANINE_2:CFA.19664.1.A1_AT similar to squamous cell carcinoma antigen recognized by T cells 3 cfa
CANINE_2:CFAAFFX.17717.1.S1_AT similar to squamous cell carcinoma antigen recognized by T cells 3 cfa
DROSOPHILA_2:1638803_AT RNA-binding protein 4F dm
DROSGENOME1:154594_AT RNA-binding protein 4F dm
HG-U133_PLUS_2:209128_S_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U133A:209128_S_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U133A_2:209128_S_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U133_PLUS_2:209127_S_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U133A_2:209127_S_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U133A:209127_S_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U95AV2:39047_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HUGENEFL:D63879_AT squamous cell carcinoma antigen recognised by T cells 3 hs
U133_X3P:G961449_3P_A_AT squamous cell carcinoma antigen recognised by T cells 3 hs
U133_X3P:HS2.116875.2.S1_3P_AT squamous cell carcinoma antigen recognised by T cells 3 hs
U133_X3P:HS.116875.0.S3_3P_AT squamous cell carcinoma antigen recognised by T cells 3 hs
U133_X3P:HS.116875.0.S1_3P_A_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U133_PLUS_2:1554276_AT squamous cell carcinoma antigen recognised by T cells 3 hs
PLASMODIUM_ANOPHELES:200069_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U133A_2:200069_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-FOCUS:200069_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U133_PLUS_2:200069_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U133B:200069_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U133A:200069_AT squamous cell carcinoma antigen recognised by T cells 3 hs
U133_X3P:200069_AT squamous cell carcinoma antigen recognised by T cells 3 hs
HG-U95C:53088_AT Squamous cell carcinoma antigen recognised by T cells 3 hs
MU11KSUBA:AA182291_S_AT squamous cell carcinoma antigen recognized by T-cells 3 mm
MG-U74AV2:97340_AT squamous cell carcinoma antigen recognized by T-cells 3 mm
MG-U74AV2:161432_F_AT squamous cell carcinoma antigen recognized by T-cells 3 mm
MOE430A:1417547_AT squamous cell carcinoma antigen recognized by T-cells 3 mm
MOUSE430A_2:1417547_AT squamous cell carcinoma antigen recognized by T-cells 3 mm
MOUSE430_2:1417547_AT squamous cell carcinoma antigen recognized by T-cells 3 mm
MOE430A:1417548_AT squamous cell carcinoma antigen recognized by T-cells 3 mm
MOUSE430A_2:1417548_AT squamous cell carcinoma antigen recognized by T-cells 3 mm
MOUSE430_2:1417548_AT squamous cell carcinoma antigen recognized by T-cells 3 mm
MU19KSUBB:TC29613_AT Squamous cell carcinoma antigen recognized by T-cells 3, mRNA (cDNA clone IMAGE:2648844) mm
MU19KSUBC:TC40378_AT Squamous cell carcinoma antigen recognized by T-cells 3, mRNA (cDNA clone IMAGE:2648844) mm
MU19KSUBC:TC40680_AT Squamous cell carcinoma antigen recognized by T-cells 3, mRNA (cDNA clone IMAGE:2648844) mm
MU19KSUBC:TC40680_G_AT Squamous cell carcinoma antigen recognized by T-cells 3, mRNA (cDNA clone IMAGE:2648844) mm
RAE230A:1373003_AT Squamous cell carcinoma antigen recognized by T-cells 3 (predicted) rn
RAT230_2:1373003_AT Squamous cell carcinoma antigen recognized by T-cells 3 (predicted) rn
RG-U34B:RC_AA851841_AT Squamous cell carcinoma antigen recognized by T-cells 3 (predicted) rn
RG-U34A:RC_AI639476_S_AT Squamous cell carcinoma antigen recognized by T-cells 3 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6396 RNA processing inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97405 Hypothetical protein B0035.12 [Caenorhabditis elegans] ref|NP_502136.1| B0035.12 [Caenorhabditis elegans] 0.0
blast CAE62057 Hypothetical protein CBG06075 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008669 EMBL-EBI Lsm interaction 6.7E-11
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 9.1E-9
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:192522_S_AT
gatcttgtgcacagagggttcgcctatgttgtaatggagaatgatcagaaggcacagcaa
gctctcttgaaagatcgagttcctgtgaagggaaggccaatgtttatctccgccaacgat
ccagaaaaacgggttggattcaaattctcaaccactcttgaaaaatcgaaagtcttcgtt
cgcaatgtccacttccaggcaaccgacgatgagttaaaggcattattctcgaaattcggt
acagtaaccagtgttcgacgcgtgactcataaagatggaaaaccaaaaggaatcgcattc
gtagattttgacacagaagcaagtgctcaaaaatgtgttgcttctggtgataaattgatg
cttcgagaaagagaactagaggtagcgttatccaatccaccagtaaaaaaggataaatcg
catggaaaaccagcagcaattggagcaagtttggaagaagatggacctagaaaaggacat
gctgcaaaactgcaattggttcccagagctattacaaacaaaactcctcaaatcactgct
cggctggacgcaatggatgtttccgaaggcacttcaacgtctcagccactttcaaatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTGTGCACAGAGGGTTCGCCT 453 419 1894 Antisense
GATCAGAAGGCACAGCAAGCTCTCT 466 421 1936 Antisense
GGATTCAAATTCTCAACCACTCTTG 399 509 2029 Antisense
CACTTCCAGGCAACCGACGATGAGT 489 195 2083 Antisense
AGTAACCAGTGTTCGACGCGTGACT 429 61 2136 Antisense
AGAGGTAGCGTTATCCAATCCACCA 359 65 2271 Antisense
AACTGCAATTGGTTCCCAGAGCTAT 26 143 2381 Antisense
CAAAACTCCTCAAATCACTGCTCGG 238 191 2412 Antisense
GCTCGGCTGGACGCAATGGATGTTT 191 299 2431 Antisense
CCGAAGGCACTTCAACGTCTCAGCC 53 261 2456 Antisense
AACGTCTCAGCCACTTTCAAATGAT 597 143 2469 Antisense
Sequence Source Affymetrix Proprietary Database