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[192520_s_at]

Description F36H2.3A /REP_DB=WormBase Gene ID /WP=CE24950 /TR=Q93691 /GB=CAB03076.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Complement factor H precursor like
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 91      6grp_total > 49      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 510
1 2 3 4 range
A 347.1
(-2.1)
P 		320
(-2.6)
P 		296.1
(-3)
P 		629.4
(3)
P 		333
B 288
(-1.5)
P 		243.2
(-2.1)
P 		173
(-3)
P 		628.5
(3)
P 		456
C 307.2
(-1.5)
P 		204.8
(-2.8)
P 		186.3
(-3)
P 		683.1
(3)
P 		497
avr 314.1
(-1.7) 		256
(-2.5) 		218.5
(-3) 		647
(3) 		429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 259.5
(0.5)
P 		262.7
(0.6)
P 		140.5
(-3)
P 		189.5
(-1.5)
P 		287
(1.4)
P 		342.4
(3)
P 		202
B 279.5
(1.8)
P 		240.6
(0.6)
P 		126.3
(-3)
P 		161.4
(-1.9)
P 		256
(1)
P 		319
(3)
P 		193
C 183.2
(-3)
P 		266.1
(3)
P 		214
(-0.8)
P 		203.6
(-1.5)
P 		235.2
(0.8)
P 		242.4
(1.3)
P 		83
avr 240.7
(0.4) 		256.5
(1.1) 		160.3
(-3) 		184.8
(-2) 		259.4
(1.2) 		301.3
(3) 		141
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 126.4
(3)
P 		69.5
(-3)
P 		77.4
(-2.2)
P 		92.1
(-0.6)
P 		57
B 91.9
(0.3)
P 		60.1
(-1.7)
P 		40.1
(-3)
P 		133.9
(3)
P 		94
C 101.7
(1.6)
P 		58.9
(-3)
P 		64.9
(-2.4)
P 		115.2
(3)
P 		56
avr 106.7
(2.2) 		62.8
(-2.8) 		60.8
(-3) 		113.7
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 47.8
(-1.4)
P 		93.4
(3)
P 		30.6
(-3)
P 		48.1
(-1.3)
P 		86.6
(2.4)
P 		83.4
(2)
P 		63
B 97.2
(1.5)
P 		80.1
(0.4)
P 		30.7
(-3)
P 		42.8
(-2.2)
P 		104
(2)
P 		118.9
(3)
P 		88
C 67.9
(1)
P 		81.2
(3)
P 		54.5
(-1)
P 		40.9
(-3)
P 		76.1
(2.2)
P 		81.1
(3)
P 		40
avr 71
(0.5) 		84.9
(2) 		38.6
(-3) 		43.9
(-2.4) 		88.9
(2.4) 		94.5
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192520_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2105
Sequence Type Exemplar sequence
Representative Public ID F36H2.3A NCBI
Target Description F36H2.3A /REP_DB=WormBase Gene ID /WP=CE24950 /TR=Q93691 /GB=CAB03076.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Complement factor H precursor like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026290(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026290 NCBI Caenorhabditis elegans F36H2.5 (F36H2.5) mRNA, complete cds. 11/11 None
SNAP00000000828 ENSEMBL cdna:SNAP chromosome:CEL140:I:9260198:9261758:-1 11/11 None
GENEFINDER00000000833 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9260198:9261758:-1 11/11 None
F36H2.3a ENSEMBL cdna:known chromosome:CEL140:I:9259974:9269764:-1 gene:F36H2.3 11/11 None
F36H2.3b ENSEMBL cdna:known chromosome:CEL140:I:9260198:9269764:-1 gene:F36H2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9260128-9269695(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H2.3
Entrez Gene 3565870 Entrez gene
WormBase CE38707 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAJ15165 Hypothetical protein F36H2.5 [Caenorhabditis elegans] ref|NP_001021461.1| F36H2.5 [Caenorhabditis elegans] 0.0
blast CAB03077 Hypothetical protein F36H2.3 [Caenorhabditis elegans] ref|NP_001021459.1| F36H2.3 [Caenorhabditis elegans] 0.0
blast CAE70376 Hypothetical protein CBG16936 [Caenorhabditis briggsae] 0.0
blast CAE70377 Hypothetical protein CBG16937 [Caenorhabditis briggsae] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 7.0E-6
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.7E-7
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 6.2E-6
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 1.6E-4
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 7.0E-6
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.7E-7
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 6.2E-6
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 1.6E-4
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.0E-10
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 4.1E-7
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 2.1E-5
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 1.7E-5
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 6.3E-7
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 2.6E-7
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 6.7E-5
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 4.7E-5
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 8.1E-5
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 8.9E-6
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 4.5E-7
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 7.0E-6
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.7E-7
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 6.2E-6
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 1.6E-4
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 7.0E-6
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 3.7E-7
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 6.2E-6
Pfam IPR000436 EMBL-EBI Sushi domain/SCR domain/CCP module 1.6E-4
Sequence
Target Sequence 
>C. ELEGANS:192520_S_AT
ggaacaactctgtcaggatctgcatcatcactatgtacaaatggagtatggaatccatta
ccaggaacttgtattgcaactctcttgagaaaacctccagcaaaaggtgttcccgagaac
ggaaccgctgctgattcaccaaaagttggaaatggaacaaatgatgatacaccgacacaa
attcaattatctggagaaaaatgtccaccaccaatagctcctgcattcggagagataaca
ttctctggtttctcaactaagggaacatttgaagatggaacaaccgcagcgctgaagtgt
aatcttggctataaaccaactgggccctcattctccacgtgtagaaaaggctcattccgt
ccaattattggcaaatgctcgaatggctcagaacaccagcttcccggagtctgcgttcca
ctgactccacccaaaaatgctcgagtcgtctatattcaaagtggtacatcactcgatttt
gaggacggtacaactgcacttttgtactgtgaagagggatttgcagtgactggtgttgcc
acatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACAACTCTGTCAGGATCTGCAT 224 529 5035 Antisense
GGATCTGCATCATCACTATGTACAA 12 513 5050 Antisense
GGAACTTGTATTGCAACTCTCTTGA 526 529 5098 Antisense
GAGAACGGAACCGCTGCTGATTCAC 525 391 5149 Antisense
GAAAAATGTCCACCACCAATAGCTC 363 355 5230 Antisense
GATAACATTCTCTGGTTTCTCAACT 539 423 5268 Antisense
TATAAACCAACTGGGCCCTCATTCT 139 641 5344 Antisense
GGCTCATTCCGTCCAATTATTGGCA 174 535 5383 Antisense
TCCACCCAAAAATGCTCGAGTCGTC 468 587 5460 Antisense
TGAGGACGGTACAACTGCACTTTTG 653 565 5514 Antisense
TGCAGTGACTGGTGTTGCCACATTA 79 567 5556 Antisense
Sequence Source Affymetrix Proprietary Database