[Home] | [Total List]

[192519_s_at]

Description F56E3.3 /REP_DB=WormBase Gene ID /WP=CE27176 /GEN=klp-4 /TR=Q20888 /GB=AAK39239.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=kinesin-related protein
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 53      4grp_high_8_8 > 08      6grp_highest_nonorm > 84      6grp_total > 36      4grp_total > 31      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 673.6
(3)
P 		424.3
(-3)
P 		428.6
(-2.9)
P 		633.2
(2)
P 		249
B 688.3
(3)
P 		431.6
(-3)
P 		430.9
(-3)
P 		650.9
(2.1)
P 		257
C 774.3
(3)
P 		450.1
(-3)
P 		487.7
(-2.3)
P 		530.3
(-1.5)
P 		324
avr 712.1
(3) 		435.3
(-3) 		449.1
(-2.7) 		604.8
(0.7) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 688.6
(3)
P 		646
(2.1)
P 		403.2
(-3)
P 		516
(-0.6)
P 		482.8
(-1.3)
P 		565
(0.4)
P 		285
B 636.2
(2.2)
P 		669.1
(3)
P 		556.7
(0.4)
P 		501.1
(-0.9)
P 		408.4
(-3)
P 		657.2
(2.7)
P 		261
C 617.7
(0.4)
P 		711.5
(2.9)
P 		628.3
(0.7)
P 		492.6
(-3)
P 		494.5
(-2.9)
P 		714.7
(3)
P 		222
avr 647.5
(2.2) 		675.5
(3) 		529.4
(-1.1) 		503.2
(-1.8) 		461.9
(-3) 		645.6
(2.2) 		214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 245.3
(3)
P 		92.1
(-3)
P 		112
(-2.2)
P 		92.7
(-3)
P 		153
B 219.5
(3)
P 		106.6
(-2.7)
P 		99.9
(-3)
P 		138.7
(-1.1)
P 		120
C 256.3
(3)
P 		129.4
(-1.6)
P 		170
(-0.1)
P 		89.4
(-3)
P 		167
avr 240.4
(3) 		109.4
(-2.9) 		127.3
(-2.1) 		106.9
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 126.9
(-1.3)
P 		229.8
(3)
P 		87.8
(-3)
P 		130.9
(-1.2)
P 		145.7
(-0.6)
P 		137.6
(-0.9)
P 		142
B 221.4
(1.7)
P 		222.7
(1.8)
P 		135.2
(-2.9)
P 		132.7
(-3)
P 		165.9
(-1.2)
P 		245.1
(3)
P 		112
C 228.9
(2.6)
P 		217.1
(2)
P 		159.9
(-0.4)
P 		99.1
(-3)
P 		160
(-0.4)
P 		239.3
(3)
P 		140
avr 192.4
(1.2) 		223.2
(3) 		127.6
(-2.6) 		120.9
(-3) 		157.2
(-0.9) 		207.3
(2.1) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192519_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18285
Sequence Type Exemplar sequence
Representative Public ID F56E3.3 NCBI
Target Description F56E3.3 /REP_DB=WormBase Gene ID /WP=CE27176 /GEN=klp-4 /TR=Q20888 /GB=AAK39239.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=kinesin-related protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171650(11), NM_171943(11), NM_076145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171650 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-4) (klp-4) mRNA, complete cds. 11/11 None
NM_171943 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-4) (klp-4) mRNA, complete cds. 11/11 None
NM_076145 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-4) (klp-4) mRNA, complete cds. 11/11 None
GENEFINDER00000022814 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3171693:3178653:-1 9/11 None
F56E3.3a ENSEMBL cdna:known chromosome:CEL140:X:3171417:3178653:-1 gene:F56E3.3 11/11 None
F56E3.3b ENSEMBL cdna:known chromosome:CEL140:X:3171436:3178653:-1 gene:F56E3.3 11/11 None
F56E3.3c ENSEMBL cdna:known chromosome:CEL140:X:3171693:3178653:-1 gene:F56E3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022812 6/11 Cross Hyb Matching Probes None
AB023496 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3171693-3178654(-) 100.0 100.0
Public Domain and Genome References
Ensembl F56E3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39239 Kinesin-like protein protein 4, isoform a [Caenorhabditis elegans] ref|NP_741745.1| Kinesin-Like Protein family member (klp-4) [Caenorhabditis elegans] 0.0
blast AAM51501 Kinesin-like protein protein 4, isoform b [Caenorhabditis elegans] ref|NP_741746.1| Kinesin-Like Protein family member (klp-4) [Caenorhabditis elegans] 0.0
blast AAN39668 Kinesin-like protein protein 4, isoform c [Caenorhabditis elegans] ref|NP_508546.2| Kinesin-Like Protein family member (klp-4) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 3.1E-6
Pfam IPR001752 EMBL-EBI Kinesin, motor region 6.4E-107
Pfam IPR001752 EMBL-EBI Kinesin, motor region 9.1E-45
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 3.1E-6
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192519_S_AT
accggtcttcactggcaatgatggctgcgaaggatacatctcacgacgagcagggcggtg
gctcatctcgaagctccacttcatccacggaatcacaacaccagcagcagacccttaatt
acattgaagcctacacaaaaagtattcaggcggtcgagtcaatgttgaaactggatagac
ttcgccaagaagtagctattaccaatatgcttactaagaaggaaaggctgcaacgtattc
aaaatttcggactaccaatgcattctttgaggatgaacagagcagtcagtttgccaaatg
caatttctaatgctggacaggtaatgacgagcatcataagcccgtacaacgataaactga
cagggattatggaagagtctaactctctgagaattgagactgtcccaacccgttcttcca
cagtaccagaaacaatgtgcttctcagcggctaagaaattgtcaccaacggaagatgtaa
aaaacggaaatgagaatagcagccctacccgtactgcaacaaatggcacgtccatgggag
ttaacctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGGTCTTCACTGGCAATGATGGC 578 87 4115 Antisense
GGCTGCGAAGGATACATCTCACGAC 580 539 4137 Antisense
CGACGAGCAGGGCGGTGGCTCATCT 585 249 4158 Antisense
CTCCACTTCATCCACGGAATCACAA 168 237 4188 Antisense
AACACCAGCAGCAGACCCTTAATTA 319 135 4211 Antisense
AATTTCGGACTACCAATGCATTCTT 304 175 4357 Antisense
GACGAGCATCATAAGCCCGTACAAC 334 379 4440 Antisense
TGAGAATTGAGACTGTCCCAACCCG 479 569 4502 Antisense
AACAATGTGCTTCTCAGCGGCTAAG 177 135 4545 Antisense
AAATGAGAATAGCAGCCCTACCCGT 501 119 4602 Antisense
GGCACGTCCATGGGAGTTAACCTCT 437 533 4639 Antisense
Sequence Source Affymetrix Proprietary Database