[Home] | [Total List]

[192515_at] interferon-related protein PC4 like

Description F58B3.6 /REP_DB=WormBase Gene ID /WP=CE06008 /TR=Q20965 /GB=CAA97798.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=interferon-related protein PC4 like
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 67      6grp_total > 58      4grp_total > 21      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 771
1 2 3 4 range
A 1445.5
(-0.1)
P 		1311.1
(-1.1)
P 		1066.9
(-3)
P 		1837.9
(3)
P 		771
B 1677.7
(2.9)
P 		1466.4
(-1.3)
P 		1379.6
(-3)
P 		1683.3
(3)
P 		304
C 1458.7
(-0.2)
P 		1319.4
(-1.5)
P 		1164.1
(-3)
P 		1793.8
(3)
P 		630
avr 1527.3
(0.4) 		1365.6
(-1.3) 		1203.5
(-3) 		1771.7
(3) 		568

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 839
1 2 3 4 5 6 range
A 2037.3
(3)
P 		1536.4
(-1.4)
P 		1350.3
(-3)
P 		1697.6
(0)
P 		1652.7
(-0.4)
P 		1885.5
(1.7)
P 		687
B 1800.9
(-0.1)
P 		1505
(-3)
P 		1673.4
(-1.4)
P 		1594.9
(-2.1)
P 		1717.5
(-0.9)
P 		2122.7
(3)
P 		618
C 1641.4
(-0.9)
P 		1531.5
(-1.7)
P 		1359.6
(-3)
P 		1861.2
(0.6)
P 		1353.4
(-3)
P 		2189
(3)
P 		836
avr 1826.5
(0.6) 		1524.3
(-2.4) 		1461.1
(-3) 		1717.9
(-0.5) 		1574.5
(-1.9) 		2065.7
(3) 		605
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 526.3
(3)
P 		284.6
(-2.6)
P 		278.9
(-2.8)
P 		269
(-3)
P 		257
B 535
(3)
P 		362.2
(-1.8)
P 		319.7
(-3)
P 		358.7
(-1.9)
P 		215
C 482.9
(3)
P 		379.3
(-0.4)
P 		405.7
(0.4)
P 		302.5
(-3)
P 		180
avr 514.7
(3) 		342
(-2.1) 		334.8
(-2.3) 		310.1
(-3) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 375.6
(-1.1)
P 		546.4
(3)
P 		294.1
(-3)
P 		430.6
(0.2)
P 		498.7
(1.9)
P 		459.1
(0.9)
P 		252
B 626.6
(0.4)
P 		501
(-1.5)
P 		406.3
(-3)
P 		422.4
(-2.7)
P 		697.8
(1.5)
P 		791.5
(3)
P 		385
C 608.4
(1.1)
P 		467.3
(-1.1)
P 		346.1
(-3)
P 		374.3
(-2.6)
P 		438
(-1.6)
P 		732.8
(3)
P 		387
avr 536.9
(0.6) 		504.9
(-0) 		348.8
(-3) 		409.1
(-1.8) 		544.8
(0.8) 		661.1
(3) 		312
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8552
Sequence Type Exemplar sequence
Representative Public ID F58B3.6 NCBI
Target Description F58B3.6 /REP_DB=WormBase Gene ID /WP=CE06008 /TR=Q20965 /GB=CAA97798.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=interferon-related protein PC4 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069796 NCBI Caenorhabditis elegans F58B3.6 (F58B3.6) mRNA, complete cds. 11/11 None
SNAP00000008576 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11636635:11637976:1 11/11 None
GENEFINDER00000008586 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11636635:11637976:1 11/11 None
F58B3.6.3 ENSEMBL cdna:known chromosome:CEL140:IV:11636614:11638164:1 gene:F58B3.6 11/11 None
F58B3.6.4 ENSEMBL cdna:known chromosome:CEL140:IV:11636616:11638151:1 gene:F58B3.6 11/11 None
F58B3.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:11636618:11638164:1 gene:F58B3.6 11/11 None
F58B3.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:11636622:11638164:1 gene:F58B3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11636640-11637982(+) 100.0 100.0
Public Domain and Genome References
Gene Title interferon-related protein PC4 like
Ensembl F58B3.6
Entrez Gene 178090 Entrez gene
SwissProt Q20965 EMBL-EBI
WormBase CE06008 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599648_AT similar to interferon-related developmental regulator 2 cfa
CANINE_2:CFA.6054.1.S1_AT similar to interferon-related developmental regulator 2 cfa
CANINE_2:CFAAFFX.16707.1.S1_AT similar to interferon-related developmental regulator 2 cfa
CANINE_2:CFAAFFX.16707.1.S1_S_AT similar to interferon-related developmental regulator 2 cfa
DROSOPHILA_2:1637307_AT dm
DROSGENOME1:145681_AT dm
DROSGENOME1:145680_AT dm
HG-U133_PLUS_2:209100_AT interferon-related developmental regulator 2 hs
HG-FOCUS:209100_AT interferon-related developmental regulator 2 hs
HG-U133A:209100_AT interferon-related developmental regulator 2 hs
HG-U133A_2:209100_AT interferon-related developmental regulator 2 hs
HG-U95AV2:36613_AT interferon-related developmental regulator 2 hs
HUGENEFL:U73167_CDS5_AT interferon-related developmental regulator 2 hs
U133_X3P:G12654958_3P_AT interferon-related developmental regulator 2 hs
MU11KSUBA:AA470234_S_AT interferon-related developmental regulator 2 mm
MU11KSUBB:MSA.12184.0_S_AT interferon-related developmental regulator 2 mm
MG-U74AV2:104760_AT interferon-related developmental regulator 2 mm
MOE430A:1451016_AT interferon-related developmental regulator 2 mm
MOUSE430A_2:1451016_AT interferon-related developmental regulator 2 mm
MOUSE430_2:1451016_AT interferon-related developmental regulator 2 mm
MOUSE430_2:1447393_AT Interferon-related developmental regulator 2, mRNA (cDNA clone MGC:46785 IMAGE:2651172) mm
MOE430B:1447393_AT Interferon-related developmental regulator 2, mRNA (cDNA clone MGC:46785 IMAGE:2651172) mm
MU19KSUBA:TC23857_S_AT Interferon-related developmental regulator 2, mRNA (cDNA clone MGC:46785 IMAGE:2651172) mm
RG-U34C:RC_AI237388_AT interferon-related developmental regulator 2 (predicted) rn
RAE230A:1373068_AT interferon-related developmental regulator 2 (predicted) rn
RAT230_2:1373068_AT interferon-related developmental regulator 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA97798 Hypothetical protein F58B3.6 [Caenorhabditis elegans] ref|NP_502197.1| F58B3.6 [Caenorhabditis elegans] 0.0
blast CAE62084 Hypothetical protein CBG06107 [Caenorhabditis briggsae] 1.0E-174
blast CAE62084 Hypothetical protein CBG06107 [Caenorhabditis briggsae] 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR006921 EMBL-EBI Interferon-related protein conserved region 6.2E-27
Pfam IPR007701 EMBL-EBI Interferon-related developmental regulator 1.0E-126
Pfam IPR006921 EMBL-EBI Interferon-related protein conserved region 6.2E-27
Pfam IPR007701 EMBL-EBI Interferon-related developmental regulator 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192515_AT
tgcagatttgcctgggcacacaccaaagtctctggatctgctaacgatatcggtcatgcc
aaacttacaatcaatgatgcagttgccgaccagcccaaaattgttactcttttatcgtca
aatcaactcgaagtgagattggctgccgctgaaacgctagcatttttacacgaattcatg
caagatgctcgtccaggatttcgctttccgaataaagagcatgtactcagtcttctcgat
caaatggtgaatgatagctcgaagaaaaaaactaaaaaagacaaaagggctcagcgatac
gcagtcagagatataagagcatttattgctgatgaagatgatgcgccagaggtgaatgtc
aaaattggacagcagacactctcactggactcgtgcgccatcaaaattttctacgacaca
acatgcgatttgcttcacggaggtcttgctcagcaactattgcacaatgaggtgctccgt
gatgtgttcgacttgggaccgattgcattggagccagctgaatcagctaataaacagagc
agacttgccgttcatgaagcagccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGATTTGCCTGGGCACACACCA 172 579 568 Antisense
GCCGACCAGCCCAAAATTGTTACTC 214 281 652 Antisense
TCGAAGTGAGATTGGCTGCCGCTGA 347 601 695 Antisense
AAGATGCTCGTCCAGGATTTCGCTT 211 155 749 Antisense
GAGCATGTACTCAGTCTTCTCGATC 498 389 784 Antisense
ATTGGACAGCAGACACTCTCACTGG 501 3 931 Antisense
GACTCGTGCGCCATCAAAATTTTCT 148 375 955 Antisense
ACATGCGATTTGCTTCACGGAGGTC 444 105 988 Antisense
TTCACGGAGGTCTTGCTCAGCAACT 561 687 1001 Antisense
AATGAGGTGCTCCGTGATGTGTTCG 297 165 1033 Antisense
GACTTGCCGTTCATGAAGCAGCCGA 431 371 1109 Antisense
Sequence Source Affymetrix Proprietary Database