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[192514_at] protein kinae C inhibitor 1 like

Description F21C3.3 /REP_DB=WormBase Gene ID /WP=CE05678 /TR=SW:P53795 /GB=CAA95802.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein kinae C inhibitor 1 like
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 66      6grp_total > 62      4grp_total > 25      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 653
1 2 3 4 range
A 1432.7
(-3)
P 		1627.8
(-0.9)
P 		1680.9
(-0.4)
P 		2001.1
(3)
P 		568
B 1448.2
(-3)
P 		1698.8
(0.1)
P 		1931.5
(3)
P 		1842.1
(1.9)
P 		483
C 1464.3
(-3)
P 		1735.6
(-0.4)
P 		1527.1
(-2.4)
P 		2085.7
(3)
P 		621
avr 1448.4
(-3) 		1687.4
(-0.3) 		1713.2
(0) 		1976.3
(3) 		528

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 605
1 2 3 4 5 6 range
A 1347.6
(-3)
P 		1707.9
(0.6)
P 		1907.2
(2.5)
P 		1952.9
(3)
P 		1571.7
(-0.8)
P 		1501.3
(-1.5)
P 		605
B 1500.7
(0.1)
P 		1385.1
(-2.5)
P 		1625.9
(3)
P 		1528.8
(0.8)
P 		1485.4
(-0.2)
P 		1363.7
(-3)
P 		262
C 1598.4
(-1.1)
P 		1507
(-3)
P 		1790.6
(3)
P 		1585.6
(-1.3)
P 		1665
(0.3)
P 		1521.2
(-2.7)
P 		284
avr 1482.2
(-2.6) 		1533.3
(-1.6) 		1774.6
(3) 		1689.1
(1.4) 		1574
(-0.9) 		1462.1
(-3) 		313
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 521.7
(3)
P 		353.4
(-1.4)
P 		439.4
(0.8)
P 		292.9
(-3)
P 		229
B 461.8
(3)
P 		419.6
(-0.7)
P 		447.6
(1.8)
P 		392.6
(-3)
P 		69
C 484.7
(1.4)
P 		499
(1.9)
P 		532.3
(3)
P 		351.7
(-3)
P 		181
avr 489.4
(3) 		424
(0.3) 		473.1
(2.3) 		345.7
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 248.4
(-3)
P 		607.4
(3)
P 		415.3
(-0.2)
P 		495.3
(1.1)
P 		474.3
(0.8)
P 		365.5
(-1)
P 		359
B 522.2
(0.7)
P 		461
(-1.1)
P 		394.8
(-3)
P 		404.9
(-2.7)
P 		603.5
(3)
P 		508.5
(0.3)
P 		209
C 592.5
(3)
P 		459.8
(0.1)
P 		455.7
(0)
P 		318.9
(-3)
P 		538.8
(1.8)
P 		509.2
(1.2)
P 		274
avr 454.4
(-0.8) 		509.4
(1.7) 		421.9
(-2.3) 		406.4
(-3) 		538.9
(3) 		461.1
(-0.5) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.974
Sequence Type Exemplar sequence
Representative Public ID F21C3.3 NCBI
Target Description F21C3.3 /REP_DB=WormBase Gene ID /WP=CE05678 /TR=SW:P53795 /GB=CAA95802.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein kinae C inhibitor 1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059655(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059655 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-202) (tag-202) mRNA, complete cds. 11/11 None
SNAP00000007023 ENSEMBL cdna:SNAP chromosome:CEL140:I:7287932:7291002:-1 11/11 None
GENEFINDER00000007028 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7287932:7288564:-1 11/11 None
F21C3.3 ENSEMBL cdna:known chromosome:CEL140:I:7287932:7288442:-1 gene:F21C3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7287862-7288373(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein kinae C inhibitor 1 like
Gene Symbol tag-202
Ensembl F21C3.3
Entrez Gene 184760 Entrez gene
SwissProt P53795 EMBL-EBI
WormBase CE05678 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251707_AT zinc-binding protein, putative / protein kinase C inhibitor, putative at
CANINE:1583259_AT similar to histidine triad nucleotide binding protein 1 cfa
CANINE_2:CFA.10927.1.A1_S_AT similar to histidine triad nucleotide binding protein 1 cfa
DROSOPHILA_2:1632642_A_AT dm
DROSGENOME1:145666_AT dm
CHICKEN:GGA.229.1.S1_AT histidine triad nucleotide binding protein 1 gga
HG-U133A_2:208826_X_AT histidine triad nucleotide binding protein 1 hs
HG-U133A:208826_X_AT histidine triad nucleotide binding protein 1 hs
HG-U133_PLUS_2:208826_X_AT histidine triad nucleotide binding protein 1 hs
HG-U95AV2:1009_AT histidine triad nucleotide binding protein 1 hs
HC-G110:1009_AT histidine triad nucleotide binding protein 1 hs
PLASMODIUM_ANOPHELES:200093_S_AT histidine triad nucleotide binding protein 1 hs
HG-U133A_2:200093_S_AT histidine triad nucleotide binding protein 1 hs
HG-U133B:200093_S_AT histidine triad nucleotide binding protein 1 hs
HG-U133A:200093_S_AT histidine triad nucleotide binding protein 1 hs
HG-FOCUS:200093_S_AT histidine triad nucleotide binding protein 1 hs
HG-U133_PLUS_2:200093_S_AT histidine triad nucleotide binding protein 1 hs
U133_X3P:200093_S_AT histidine triad nucleotide binding protein 1 hs
HG-U133_PLUS_2:207721_X_AT histidine triad nucleotide binding protein 1 hs
HG-U133A:207721_X_AT histidine triad nucleotide binding protein 1 hs
HG-U133A_2:207721_X_AT histidine triad nucleotide binding protein 1 hs
HUGENEFL:U51004_AT histidine triad nucleotide binding protein 1 hs
U133_X3P:G4885412_3P_S_AT histidine triad nucleotide binding protein 1 hs
U133_X3P:HS.256697.2.A1_3P_A_AT histidine triad nucleotide binding protein 1 hs
HG-U133_PLUS_2:1555961_A_AT histidine triad nucleotide binding protein 1 hs
HG-U133_PLUS_2:1555960_AT Histidine triad nucleotide binding protein 1 hs
Protein Similarities
Method ID Description E-Value
blast CAA95803 Hypothetical protein F21C3.4a [Caenorhabditis elegans] ref|NP_001021398.1| RNAi DEfective family member (rde-2) [Caenorhabditis elegans] 0.0
blast CAI70415 Hypothetical protein F21C3.4b [Caenorhabditis elegans] ref|NP_001021399.1| RNAi DEfective family member (rde-2) [Caenorhabditis elegans] 0.0
blast CAE74220 Hypothetical protein CBG21903 [Caenorhabditis briggsae] 1.0E-107
blast CAA95802 Hypothetical protein F21C3.3 [Caenorhabditis elegans] ref|NP_492056.1| Temporarily Assigned Gene name family member (tag-202) [Caenorhabditis elegans] sp|P53795|YHIT_CAEEL Hypothetical HIT-like protein F21C3.3 7.0E-69
blast CAA95802 Hypothetical protein F21C3.3 [Caenorhabditis elegans] ref|NP_492056.1| Temporarily Assigned Gene name family member (tag-202) [Caenorhabditis elegans] sp|P53795|YHIT_CAEEL Hypothetical HIT-like protein F21C3.3 1.0E-68
blast CAE74221 Hypothetical protein CBG21904 [Caenorhabditis briggsae] 5.0E-64
blast CAE74221 Hypothetical protein CBG21904 [Caenorhabditis briggsae] 8.0E-64
blast AAN10414 CG2862-PB, isoform B [Drosophila melanogaster] ref|NP_722836.1| CG2862-PB, isoform B [Drosophila melanogaster] 2.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001310 EMBL-EBI Histidine triad (HIT) protein 6.5E-61
Pfam IPR001310 EMBL-EBI Histidine triad (HIT) protein 6.5E-61
Pfam IPR001310 EMBL-EBI Histidine triad (HIT) protein 6.5E-61
Sequence
Target Sequence 
>C. ELEGANS:192514_AT
gataaagcccacttggcggcaattaacaaagatgttcaagccaacgacactcttttcgga
aaaataattcgaaaagagattccagcgaaaatcatttttgaagatgatgaggctctcgca
ttccatgatgtctctccacaagctccaattcattttcttgtgatccctaagcgtcgcatt
gatatgctcgagaatgccgttgattcggatgctgcgcttattggaaagcttatggttact
gcttcaaaggttgcaaagcagctcggcatggccaatggataccgtgttgttgtgaacaat
ggaaaagatggagctcaatcagttttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAAAGCCCACTTGGCGGCAATTA 476 417 25 Antisense
TCAAGCCAACGACACTCTTTTCGGA 98 631 60 Antisense
AGATGATGAGGCTCTCGCATTCCAT 341 67 126 Antisense
CAATTCATTTTCTTGTGATCCCTAA 177 181 170 Antisense
TTGTGATCCCTAAGCGTCGCATTGA 265 707 182 Antisense
TAAGCGTCGCATTGATATGCTCGAG 387 637 192 Antisense
GAGAATGCCGTTGATTCGGATGCTG 92 391 214 Antisense
AGCTTATGGTTACTGCTTCAAAGGT 509 77 251 Antisense
TTGCAAAGCAGCTCGGCATGGCCAA 483 701 275 Antisense
GGCCAATGGATACCGTGTTGTTGTG 21 545 294 Antisense
AAGATGGAGCTCAATCAGTTTTCCA 305 155 329 Antisense
Sequence Source Affymetrix Proprietary Database