[Home] | [Total List]

[192512_at] tetracyclin resistance protein like

Description W01B6.3 /REP_DB=WormBase Gene ID /WP=CE03755 /TR=Q23104 /GB=CAA92626.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=tetracyclin resistance protein like
Cluster 6grp_high1_10_10 > 10      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_total > 50      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 199.6
(2.6)
P 		123.9
(-3)
P 		205.2
(3)
P 		171.6
(0.5)
P 		81
B 173.5
(-0.9)
P 		192.7
(3)
P 		188.9
(2.2)
P 		163.4
(-3)
P 		29
C 214.4
(2.6)
P 		179.5
(-0.6)
P 		152.8
(-3)
P 		218.8
(3)
P 		66
avr 195.8
(3) 		165.4
(-3) 		182.3
(0.3) 		184.6
(0.8) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 137.3
(3)
P 		59
(-2.1)
P 		84.8
(-0.4)
P 		123.8
(2.1)
P 		73.5
(-1.1)
P 		44.9
(-3)
M 		92
B 65.9
(-2.8)
P 		83.6
(-0.1)
P 		103.2
(2.8)
P 		104.4
(3)
P 		64.7
(-3)
P 		69
(-2.4)
P 		40
C 81.2
(-1)
P 		113.5
(3)
P 		95.5
(0.8)
P 		86.6
(-0.3)
P 		64.6
(-3)
P 		67.5
(-2.6)
P 		49
avr 94.8
(1.6) 		85.4
(0.4) 		94.5
(1.6) 		104.9
(3) 		67.6
(-2) 		60.5
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 72.7
(3)
P 		26.9
(-2.8)
P 		53.6
(0.6)
P 		25.1
(-3)
P 		48
B 55.3
(3)
P 		47.6
(0.7)
P 		43.8
(-0.4)
P 		34.8
(-3)
P 		21
C 71
(3)
P 		51.6
(-0.4)
P 		53.3
(-0.1)
P 		36.9
(-3)
P 		34
avr 66.3
(3) 		42
(-1.3) 		50.2
(0.2) 		32.3
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 25.3
(1.2)
P 		21
(-0)
P 		18.5
(-0.8)
P 		31.4
(3)
P 		22.2
(0.3)
P 		10.9
(-3)
M 		21
B 22.9
(-3)
P 		27.8
(3)
P 		25
(-0.4)
P 		27.7
(2.9)
P 		26.3
(1.2)
P 		25.7
(0.4)
P 		5
C 30.1
(1.4)
P 		34.6
(3)
P 		24.3
(-0.6)
P 		17.4
(-3)
P 		20.9
(-1.8)
P 		22.6
(-1.2)
P 		17
avr 26.1
(1.7) 		27.8
(3) 		22.6
(-0.9) 		25.5
(1.3) 		23.1
(-0.5) 		19.7
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8372
Sequence Type Exemplar sequence
Representative Public ID W01B6.3 NCBI
Target Description W01B6.3 /REP_DB=WormBase Gene ID /WP=CE03755 /TR=Q23104 /GB=CAA92626.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=tetracyclin resistance protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069422 NCBI Caenorhabditis elegans W01B6.3 (W01B6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000040436 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10070242:10075063:-1 11/11 None
W01B6.3 ENSEMBL cdna:known chromosome:CEL140:IV:10070242:10072415:-1 gene:W01B6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040427 7/11 Cross Hyb Matching Probes None
SNAP00000040428 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10070247-10072421(-) 100.0 100.0
Public Domain and Genome References
Gene Title tetracyclin resistance protein like
Ensembl W01B6.3
Entrez Gene 189080 Entrez gene
SwissProt Q23104 EMBL-EBI
WormBase CE03755 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92626 Hypothetical protein W01B6.3 [Caenorhabditis elegans] ref|NP_501823.1| W01B6.3 [Caenorhabditis elegans] 0.0
blast CAE59935 Hypothetical protein CBG03421 [Caenorhabditis briggsae] 0.0
blast CAA92625 Hypothetical protein W01B6.2 [Caenorhabditis elegans] ref|NP_501824.1| W01B6.2 [Caenorhabditis elegans] 0.0
blast CAB05312 Hypothetical protein ZK550.2 [Caenorhabditis elegans] ref|NP_503058.1| ZK550.2 [Caenorhabditis elegans] 5.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 6.1E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501823.1 11 20-42,55-74,84-106,118-140,160-179,206-228,243-265,277-299,336-358,370-392,402-424
W01B6.3 11 20-42,55-74,84-106,118-140,160-179,206-228,243-265,277-299,336-358,370-392,402-424
GENEFINDER00000040436 12 378-400,415-437,449-471,476-498,510-532,552-571,598-620,635-657,669-691,728-750,762-784,794-816
Sequence
Target Sequence 
>C. ELEGANS:192512_AT
ttagtctggcgtctacacggcttaaaacgattgacaacaggttgctcttactttgcggtt
tgatattcttcgaggtattcttcatctttcacatgccattaccattctaccctggcccat
tggatcgtccagatacaatgaactcaaccacaacattaattggaagatgcgactttgact
ggtgtgatgatactccaagagttccacttccgttatatttatttatttcctccatcgtca
ttggactcggatttccgttaatttcatctacatcaagctcacttttaagtcaaatcattg
gcccgagaaaacagggtactgttcaaggatttttcgcgtttactggctcattttcacaat
ttgttgtatctttgttttcgacgcgcctattcgagttaagtggctataaatggataatga
tgtatcattggtgtatagtcacagttgctgtattttctgtaattcttctttggcgccgtc
ttgtaccattaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAGTCTGGCGTCTACACGGCTTAA 692 673 800 Antisense
CAACAGGTTGCTCTTACTTTGCGGT 284 189 834 Antisense
TTCGAGGTATTCTTCATCTTTCACA 174 695 868 Antisense
TTTCACATGCCATTACCATTCTACC 438 673 886 Antisense
TGGCCCATTGGATCGTCCAGATACA 261 545 912 Antisense
GATGCGACTTTGACTGGTGTGATGA 210 415 965 Antisense
AGAGTTCCACTTCCGTTATATTTAT 241 67 997 Antisense
TTTCCTCCATCGTCATTGGACTCGG 364 667 1025 Antisense
GATTTTTCGCGTTTACTGGCTCATT 661 427 1127 Antisense
TGTTGTATCTTTGTTTTCGACGCGC 85 563 1161 Antisense
TTGGCGCCGTCTTGTACCATTAAAA 291 683 1269 Antisense
Sequence Source Affymetrix Proprietary Database