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[192509_at] von Willebrand factor type A domain

Description ZK666.6 /REP_DB=WormBase Gene ID /WP=CE02391 /TR=Q23564 /GB=CAA88985.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=von Willebrand factor type A domain
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 93      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 45      6grp_total > 84      4grp_total > 16      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 905
1 2 3 4 range
A 238.7
(-3)
P 		386.2
(-2)
P 		484.3
(-1.3)
P 		1092.2
(3)
P 		854
B 217
(-3)
P 		321.6
(-2.3)
P 		551.2
(-0.8)
P 		1122.4
(3)
P 		905
C 223.4
(-3)
P 		343.6
(-2.1)
P 		517.5
(-0.9)
P 		1062.6
(3)
P 		839
avr 226.4
(-3) 		350.5
(-2.1) 		517.7
(-1) 		1092.4
(3) 		866

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3330
1 2 3 4 5 6 range
A 321.7
(-3)
P 		788.5
(-2.2)
P 		1438.5
(-1)
P 		3651.5
(3)
P 		2875.4
(1.6)
P 		2273.5
(0.5)
P 		3330
B 365.9
(-3)
P 		835.1
(-2)
P 		1628.3
(-0.2)
P 		2928.4
(2.7)
P 		3068.3
(3)
P 		1916.2
(0.4)
P 		2702
C 340.9
(-3)
P 		783.2
(-2.1)
P 		1556.3
(-0.6)
P 		3368.3
(2.9)
P 		3395.6
(3)
P 		2856.8
(1.9)
P 		3055
avr 342.8
(-3) 		802.3
(-2.1) 		1541
(-0.6) 		3316.1
(3) 		3113.1
(2.6) 		2348.8
(1) 		2973
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 86.9
(-2.8)
P 		83.8
(-3)
P 		126.6
(0.4)
P 		159.9
(3)
P 		76
B 69.2
(-3)
P 		79.4
(-2.6)
P 		127.7
(-0.9)
P 		239.2
(3)
P 		170
C 73.9
(-3)
P 		98.8
(-1.6)
P 		180.4
(3)
P 		179.2
(2.9)
P 		107
avr 76.7
(-3) 		87.3
(-2.5) 		144.9
(0.5) 		192.8
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1187
1 2 3 4 5 6 range
A 59.3
(-3)
P 		280.4
(-1.5)
P 		313.3
(-1.2)
P 		926.1
(3)
P 		867.7
(2.6)
P 		553.5
(0.4)
P 		867
B 127.3
(-3)
P 		278
(-2.2)
P 		395.4
(-1.6)
P 		775.6
(0.5)
P 		1246.6
(3)
P 		714.5
(0.1)
P 		1119
C 126.3
(-3)
P 		239
(-2.3)
P 		396.1
(-1.3)
P 		677.4
(0.4)
P 		1098.8
(3)
P 		956.3
(2.1)
P 		973
avr 104.3
(-3) 		265.8
(-2) 		368.3
(-1.4) 		793
(1.3) 		1071
(3) 		741.4
(1) 		967
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3797
Sequence Type Exemplar sequence
Representative Public ID ZK666.6 NCBI
Target Description ZK666.6 /REP_DB=WormBase Gene ID /WP=CE02391 /TR=Q23564 /GB=CAA88985.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=von Willebrand factor type A domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063858(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063858 NCBI Caenorhabditis elegans ZK666.6 (ZK666.6) mRNA, complete cds. 11/11 None
SNAP00000005237 ENSEMBL cdna:SNAP chromosome:CEL140:II:10480062:10481727:-1 11/11 None
GENEFINDER00000005246 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10480062:10481727:-1 11/11 None
ZK666.6 ENSEMBL cdna:known chromosome:CEL140:II:10480062:10481727:-1 gene:ZK666.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10480058-10481724(-) 100.0 100.0
Public Domain and Genome References
Gene Title von Willebrand factor type A domain
Ensembl ZK666.6
Entrez Gene 191384 Entrez gene
SwissProt Q23564 EMBL-EBI
WormBase CE02391 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88985 Hypothetical protein ZK666.6 [Caenorhabditis elegans] ref|NP_496259.1| ZK666.6 [Caenorhabditis elegans] 0.0
blast CAE59673 Hypothetical protein CBG03095 [Caenorhabditis briggsae] 1.0E-144
blast CAA88984 Hypothetical protein ZK666.5 [Caenorhabditis elegans] ref|NP_496258.1| ZK666.5 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.9E-27
Sequence
Target Sequence 
>C. ELEGANS:192509_AT
tctccaccatacaacttcacgaataccgaagacaacgggcaagttattggagagattcag
gatgctttgctgcaagtgaactgtttctgccgaaactcgtggattcaataccgtgtatct
tacactgatgttcactcctaccgctacggtgtctgcattcttccagtcggtttcaatgcg
gtatggcgcgctgccaaatcttcatgcatgaaccgaaatgcatatcttgtcactgaattc
gattcgaacaaacacgattatgtcctgactgcagtgagcaattacacaggattcagtgta
cctctaacttatcacaacggactcagtatggtcaaaggtgtctgggtatgggatcaacca
caaggaatgcctcaaccacagcttcaaagttatgcaggatggaatccaggatatcccatt
tcggactctactctcacaggagttctgaatcaacaatcaagtgtgcaactgcagtctgga
tggcagaatatcaagccactgacgactggagcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCACCATACAACTTCACGAATA 589 609 637 Antisense
GCTGCAAGTGAACTGTTTCTGCCGA 32 295 705 Antisense
ATCTTACACTGATGTTCACTCCTAC 646 29 753 Antisense
TCTTCCAGTCGGTTTCAATGCGGTA 664 613 795 Antisense
TATGGCGCGCTGCCAAATCTTCATG 499 655 818 Antisense
AACACGATTATGTCCTGACTGCAGT 527 135 887 Antisense
GTACCTCTAACTTATCACAACGGAC 648 457 934 Antisense
TGCCTCAACCACAGCTTCAAAGTTA 553 585 1004 Antisense
AGGATATCCCATTTCGGACTCTACT 397 57 1044 Antisense
GGACTCTACTCTCACAGGAGTTCTG 162 525 1059 Antisense
ATCAAGCCACTGACGACTGGAGCCA 707 25 1126 Antisense
Sequence Source Affymetrix Proprietary Database