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[192508_s_at]

Description C01C4.3 /REP_DB=WormBase Gene ID /WP=CE03889 /TR=SW:Q11090 /GB=AAA82347.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine protein kinase
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 15      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 05      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 433
1 2 3 4 range
A 464.7
(3)
P 		185.7
(-2.2)
P 		141.6
(-3)
P 		316.6
(0.2)
P 		323
B 547.1
(3)
P 		204.5
(-1.8)
P 		114.4
(-3)
P 		321.6
(-0.1)
P 		433
C 516.5
(3)
P 		249.4
(-1.9)
P 		191.4
(-3)
P 		399.7
(0.8)
P 		325
avr 509.4
(3) 		213.2
(-1.9) 		149.1
(-3) 		346
(0.3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 332.2
(3)
P 		304.7
(2)
P 		166.4
(-3)
P 		195.5
(-1.9)
P 		183.5
(-2.4)
P 		177.2
(-2.6)
P 		166
B 350
(3)
P 		313.4
(2)
P 		180.5
(-1.7)
P 		164.5
(-2.1)
P 		189.3
(-1.4)
P 		131.6
(-3)
P 		218
C 404.7
(3)
P 		257.8
(-0.4)
P 		200.5
(-1.8)
P 		152.8
(-2.9)
P 		203.5
(-1.7)
P 		147.9
(-3)
P 		257
avr 362.3
(3) 		292
(1) 		182.5
(-2.1) 		170.9
(-2.5) 		192.1
(-1.9) 		152.2
(-3) 		210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 169.2
(3)
P 		40.3
(-2.9)
P 		37
(-3)
P 		46.3
(-2.6)
P 		132
B 174.5
(3)
P 		50.5
(-2)
P 		26.5
(-3)
P 		68.5
(-1.3)
P 		148
C 171
(3)
P 		71.7
(-2.7)
P 		66.7
(-3)
P 		67.4
(-3)
P 		104
avr 171.6
(3) 		54.2
(-2.5) 		43.4
(-3) 		60.7
(-2.2) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 61.2
(-0.9)
P 		108.4
(3)
P 		36.2
(-3)
P 		49.6
(-1.9)
P 		55.4
(-1.4)
P 		43.1
(-2.4)
P 		72
B 121.8
(3)
P 		104.3
(1.7)
P 		43.8
(-3)
P 		43.6
(-3)
P 		76.9
(-0.4)
P 		49.1
(-2.6)
P 		78
C 150
(3)
P 		78.7
(-0.6)
P 		51
(-2)
P 		30.7
(-3)
P 		65.9
(-1.2)
P 		49.5
(-2.1)
P 		119
avr 111
(3) 		97.1
(1.8) 		43.7
(-2.8) 		41.3
(-3) 		66.1
(-0.9) 		47.2
(-2.5) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192508_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18531
Sequence Type Exemplar sequence
Representative Public ID C01C4.3 NCBI
Target Description C01C4.3 /REP_DB=WormBase Gene ID /WP=CE03889 /TR=SW:Q11090 /GB=AAA82347.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171655(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171655 NCBI Caenorhabditis elegans C01C4.3a (C01C4.3) mRNA, complete cds. 11/11 None
GENEFINDER00000007730 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3706642:3712999:1 11/11 None
C01C4.3a ENSEMBL cdna:known chromosome:CEL140:X:3709257:3713313:1 gene:C01C4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171656 6/11 Cross Hyb Matching Probes None
SNAP00000007723 4/11 Cross Hyb Matching Probes None
SNAP00000007724 1/11 Cross Hyb Matching Probes None
SNAP00000007725 5/11 Cross Hyb Matching Probes None
C01C4.3b 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180660 2 1 NM_171655 192508_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3709343-3713000(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01C4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM51507 Hypothetical protein C01C4.3a [Caenorhabditis elegans] ref|NP_741754.2| C01C4.3a [Caenorhabditis elegans] pir||T34074 hypothetical protein C01C4.3 - Caenorhabditis elegans 0.0
blast CAE68474 Hypothetical protein CBG14273 [Caenorhabditis briggsae] 0.0
blast AAM51508 Hypothetical protein C01C4.3b [Caenorhabditis elegans] ref|NP_741755.1| C01C4.3b [Caenorhabditis elegans] sp|Q11090|YWY3_CAEEL Putative serine/threonine-protein kinase C01C4.3 0.0
blast AAM51508 Hypothetical protein C01C4.3b [Caenorhabditis elegans] ref|NP_741755.1| C01C4.3b [Caenorhabditis elegans] sp|Q11090|YWY3_CAEEL Putative serine/threonine-protein kinase C01C4.3 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 9.5E-27
Pfam IPR000719 EMBL-EBI Protein kinase 3.4E-4
Pfam IPR000719 EMBL-EBI Protein kinase 9.5E-27
Pfam IPR000719 EMBL-EBI Protein kinase 3.4E-4
Sequence
Target Sequence 
>C. ELEGANS:192508_S_AT
gattgacgcgaaaagtggacaccactgtaaaatatttggaatacgtcaacaattaccacg
ccgccgaactctgcgacactgttgtgaacgaaaagctcgtggtaaacaagagcacggata
tttgggcacttggtatcattttcttctactgcatgaaagggaaattcccatggcagaaag
catcaataatgtgcaaaccatactgggaatgggaacaatggctgaagcgaaagaatccag
ctttgccaaagaagtttaacccgttctctgaaaaagctttaaaactgttcaaaaaatcat
taactcctcgattcaaagacaggtggacagcaaaagatatgagaaagtgcttggcaaaag
aaaaactcttaaaatcagttaagaggcctgaagaagactactatgtaatgatagacactg
cctcaaagtcccgccaaaccgcaacttcaagttcaggcgagcctcaggaccctagtgctc
cggcagcggagcagaggaaacagaagtcgactcttcaacaatggatcagcacgaccttaa
cggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGACGCGAAAAGTGGACACCAC 98 433 494 Antisense
AATACGTCAACAATTACCACGCCGC 623 171 533 Antisense
GAACTCTGCGACACTGTTGTGAACG 473 349 559 Antisense
CAAGAGCACGGATATTTGGGCACTT 508 177 600 Antisense
TGGTATCATTTTCTTCTACTGCATG 687 551 624 Antisense
TCATTAACTCCTCGATTCAAAGACA 332 619 790 Antisense
TGATAGACACTGCCTCAAAGTCCCG 276 565 902 Antisense
GCAACTTCAAGTTCAGGCGAGCCTC 679 317 934 Antisense
GACCCTAGTGCTCCGGCAGCGGAGC 239 381 961 Antisense
GTCGACTCTTCAACAATGGATCAGC 38 475 999 Antisense
ATGGATCAGCACGACCTTAACGGCA 531 51 1014 Antisense
Sequence Source Affymetrix Proprietary Database