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[192505_at]

Description F29D10.5 /REP_DB=WormBase Gene ID /WP=CE05764 /TR=Q19902 /GB=CAB00096.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 33      4grp_high_8_8 > 42      6grp_highest_nonorm > 80      6grp_total > 21      4grp_total > 53      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 221.1
(3)
P 		204.1
(1.7)
P 		216.6
(2.6)
P 		144.5
(-3)
A 		77
B 252
(1.5)
P 		274.8
(3)
M 		181.4
(-3)
A 		181
(-3)
P 		94
C 255.7
(3)
P 		246.1
(2.3)
P 		198.2
(-1)
P 		169.3
(-3)
P 		86
avr 242.9
(3) 		241.7
(2.9) 		198.7
(-0.4) 		164.9
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 274
(2.7)
P 		244.5
(1.2)
P 		279.3
(3)
P 		201.5
(-1.1)
P 		214.9
(-0.4)
P 		165.4
(-3)
P 		114
B 193.7
(-2.3)
P 		286.2
(3)
P 		231.2
(-0.2)
P 		244
(0.6)
P 		221.9
(-0.7)
P 		182.3
(-3)
P 		104
C 186.8
(-3)
P 		235.7
(1.7)
P 		205.9
(-1.2)
P 		233.9
(1.5)
P 		249
(3)
P 		229.4
(1.1)
P 		62
avr 218.2
(-0.5) 		255.5
(3) 		238.8
(1.4) 		226.5
(0.2) 		228.6
(0.4) 		192.4
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 80.5
(3)
P 		44.3
(-0.7)
P 		56.6
(0.6)
P 		21.1
(-3)
A 		59
B 80.4
(3)
P 		67.9
(1.2)
M 		42
(-2.5)
A 		38.6
(-3)
P 		42
C 84.6
(3)
P 		70.7
(1.5)
P 		69.1
(1.3)
P 		28.5
(-3)
P 		56
avr 81.8
(3) 		61
(0.6) 		55.9
(0) 		29.4
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 50.5
(-1.7)
P 		86.9
(3)
P 		60.8
(-0.4)
P 		51.1
(-1.6)
P 		64.9
(0.2)
P 		40.3
(-3)
P 		47
B 67.4
(-1.3)
P 		95.3
(3)
P 		56.2
(-3)
P 		64.6
(-1.7)
P 		90.1
(2.2)
P 		68
(-1.2)
P 		39
C 69.3
(1)
P 		71.9
(1.4)
P 		52.4
(-2)
P 		47
(-3)
P 		80.6
(3)
P 		76.8
(2.3)
P 		34
avr 62.4
(-1.4) 		84.7
(3) 		56.5
(-2.5) 		54.2
(-3) 		78.5
(1.8) 		61.7
(-1.5) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192505_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1357
Sequence Type Exemplar sequence
Representative Public ID F29D10.5 NCBI
Target Description F29D10.5 /REP_DB=WormBase Gene ID /WP=CE05764 /TR=Q19902 /GB=CAB00096.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026331(11), NM_001026332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026331 NCBI Caenorhabditis elegans F55H12.6a (F55H12.6) mRNA, complete cds. 11/11 None
NM_001026332 NCBI Caenorhabditis elegans F55H12.6b (F55H12.6) mRNA, complete cds. 11/11 None
SNAP00000040559 ENSEMBL cdna:SNAP chromosome:CEL140:I:8861957:8863569:-1 11/11 None
GENEFINDER00000040564 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8861957:8863569:-1 11/11 None
F55H12.6a ENSEMBL cdna:known chromosome:CEL140:I:8861957:8869398:-1 gene:F55H12.6 11/11 None
F55H12.6b ENSEMBL cdna:known chromosome:CEL140:I:8861957:8863569:-1 gene:F55H12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8861887-8863500(-) 100.0 100.0
Public Domain and Genome References
Ensembl F55H12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE17821 Hypothetical protein F55H12.6a [Caenorhabditis elegans] emb|CAH10792.1| Hypothetical protein F55H12.6a [Caenorhabditis elegans] ref|NP_001021502.1| F55H12.6a [Caenorhabditis elegans] 1.0E-180
blast CAB00096 Hypothetical protein F55H12.6b [Caenorhabditis elegans] ref|NP_001021503.1| F55H12.6b [Caenorhabditis elegans] 1.0E-168
blast CAB00096 Hypothetical protein F55H12.6b [Caenorhabditis elegans] ref|NP_001021503.1| F55H12.6b [Caenorhabditis elegans] 1.0E-100
blast CAE17821 Hypothetical protein F55H12.6a [Caenorhabditis elegans] emb|CAH10792.1| Hypothetical protein F55H12.6a [Caenorhabditis elegans] ref|NP_001021502.1| F55H12.6a [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR003656 EMBL-EBI BED finger 4.9E-13
Sequence
Target Sequence 
>C. ELEGANS:192505_AT
cgacatcgaatatctccgactccaactatcaactcatctgtcaccccaaatgaggagcat
gagcccgatttgaaaatgttcaattcaggggatactctacaaaatttcctgattgatatt
gacaatcacattcgtcagaaaaatcaagaatcacaggaagccattggaactggagaagag
agcacgtcagctagtgctctagatatgccaagttcacaaaaagaatcgagagagccaagt
ccgaatagtagtatgctcgacgaaactaacggtggcacagaaacaggtgattcatcacct
actccattcaatccagctcgtccatttggttgtgtgatctgtccatgctcatttccacgt
gtcaaggatctcacaatccacgtcaccagtgtgcatcgaacacgtttccgatgtaacaca
tgcctggctgagtttgttcaaccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACATCGAATATCTCCGACTCCAA 42 253 361 Antisense
TCCAACTATCAACTCATCTGTCACC 403 587 381 Antisense
ATCTGTCACCCCAAATGAGGAGCAT 648 31 396 Antisense
GAGGAGCATGAGCCCGATTTGAAAA 70 405 412 Antisense
CCAGCTCGTCCATTTGGTTGTGTGA 702 271 673 Antisense
TTGTGTGATCTGTCCATGCTCATTT 381 709 690 Antisense
CATGCTCATTTCCACGTGTCAAGGA 345 209 704 Antisense
TCAAGGATCTCACAATCCACGTCAC 665 631 722 Antisense
TCCACGTCACCAGTGTGCATCGAAC 470 589 737 Antisense
GTTTCCGATGTAACACATGCCTGGC 309 451 764 Antisense
GCCTGGCTGAGTTTGTTCAACCACA 67 283 782 Antisense
Sequence Source Affymetrix Proprietary Database