[Home] | [Total List]

[192503_at] DNA-directed RNA polymerase I like

Description C15H11.8 /REP_DB=WormBase Gene ID /WP=CE08185 /TR=O17587 /GB=CAB02739.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DNA-directed RNA polymerase I like
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 77      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 84      6grp_total > 78      4grp_total > 24      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 624.6
(-3)
P 		759.3
(0.4)
P 		801
(1.4)
P 		865.5
(3)
P 		241
B 672.7
(-3)
P 		803.6
(0.7)
P 		769.9
(-0.3)
P 		887.1
(3)
P 		214
C 600.6
(-3)
P 		738.4
(-0.3)
P 		826.7
(1.5)
P 		901.6
(3)
P 		301
avr 632.6
(-3) 		767.1
(0.2) 		799.2
(1) 		884.7
(3) 		252

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 531
1 2 3 4 5 6 range
A 533.1
(-2.6)
P 		516.9
(-3)
P 		639.2
(0)
P 		599.3
(-1)
P 		653.7
(0.4)
P 		759.2
(3)
P 		242
B 613.7
(-2.9)
P 		637.8
(-2.4)
P 		633
(-2.5)
P 		609.9
(-3)
P 		765.9
(0.1)
P 		907.9
(3)
P 		298
C 536.4
(-2.1)
P 		701
(-0.2)
P 		452.8
(-3)
P 		614
(-1.2)
P 		662.1
(-0.6)
P 		983.8
(3)
P 		531
avr 561.1
(-3) 		618.6
(-1.9) 		575
(-2.7) 		607.7
(-2.1) 		693.9
(-0.5) 		883.6
(3) 		323
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 227.4
(3)
P 		164.8
(-0.7)
P 		209.4
(1.9)
P 		126.7
(-3)
P 		101
B 214.5
(3)
P 		198.5
(0.3)
P 		178.4
(-3)
P 		189
(-1.2)
P 		36
C 198.8
(-0.9)
P 		212.3
(-0.3)
P 		288.1
(3)
P 		152
(-3)
P 		136
avr 213.6
(2) 		191.9
(0.1) 		225.3
(3) 		155.9
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 240
1 2 3 4 5 6 range
A 98.3
(-3)
P 		183.8
(2.2)
P 		139.2
(-0.5)
P 		152
(0.3)
P 		197.3
(3)
P 		184.8
(2.2)
P 		99
B 213.5
(-1.1)
P 		212.3
(-1.1)
P 		153.7
(-3)
P 		161.5
(-2.7)
P 		311.2
(2.1)
P 		338.5
(3)
P 		185
C 198.8
(-0.7)
P 		213.9
(-0.2)
P 		115.3
(-3)
P 		123.5
(-2.8)
P 		214.2
(-0.2)
P 		329.3
(3)
P 		214
avr 170.2
(-1.6) 		203.3
(-0.3) 		136.1
(-3) 		145.7
(-2.6) 		240.9
(1.2) 		284.2
(3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14078
Sequence Type Exemplar sequence
Representative Public ID C15H11.8 NCBI
Target Description C15H11.8 /REP_DB=WormBase Gene ID /WP=CE08185 /TR=O17587 /GB=CAB02739.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DNA-directed RNA polymerase I like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074171(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074171 NCBI Caenorhabditis elegans C15H11.8 (C15H11.8) mRNA, complete cds. 11/11 None
SNAP00000026581 ENSEMBL cdna:SNAP chromosome:CEL140:V:14425418:14425886:-1 11/11 None
GENEFINDER00000026590 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14424359:14425886:-1 10/11 None
C15H11.8 ENSEMBL cdna:known chromosome:CEL140:V:14425313:14425892:-1 gene:C15H11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14425417-14425886(-) 100.0 100.0
Public Domain and Genome References
Gene Title DNA-directed RNA polymerase I like
Ensembl C15H11.8
Entrez Gene 182648 Entrez gene
SwissProt O17587 EMBL-EBI
WormBase CE08185 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6354 RNA elongation inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02738 Hypothetical protein C15H11.7 [Caenorhabditis elegans] ref|NP_506571.1| Proteasome Alpha Subunit family member (pas-1) [Caenorhabditis elegans] sp|O17586|PSA6_CAEEL Proteasome subunit alpha type 6 (Proteasome subunit alpha 1) 1.0E-135
blast CAE60903 Hypothetical protein CBG04619 [Caenorhabditis briggsae] 1.0E-130
blast CAE72249 Hypothetical protein CBG19367 [Caenorhabditis briggsae] 8.0E-97
blast CAB02739 Hypothetical protein C15H11.8 [Caenorhabditis elegans] ref|NP_506572.1| C15H11.8 [Caenorhabditis elegans] 2.0E-65
blast CAE60902 Hypothetical protein CBG04618 [Caenorhabditis briggsae] 1.0E-62
blast XP_642247 RNA polymerase I subunit [Dictyostelium discoideum] gb|EAL68304.1| RNA polymerase I subunit [Dictyostelium discoideum] 1.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR001222 EMBL-EBI Transcription factor TFIIS 2.2E-14
Pfam IPR001353 EMBL-EBI Peptidase T1, 20S proteasome 5.3E-53
Sequence
Target Sequence 
>C. ELEGANS:192503_AT
tgaacttcctctcatacgacgatgacttttgtggatattgcggcgccatcttggaactac
cggcacaggctccagcgacggtctcctgcaaagtatgctcaactcgatgggctgtgaaag
aaagagtagatcaagtggttagccgtgtcgaaaagatctacgaacgaacggttgctgata
cagatggaattgaaaatgacgagtcagcggatgctgttgttgatcatatttgcacaaagt
gcggtcactcaaaggcatcatattctactatgcaaacgagatctgcagatgaaggacaaa
cagtattctatacatgcctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACTTCCTCTCATACGACGATGA 555 573 20 Antisense
GGATATTGCGGCGCCATCTTGGAAC 631 509 52 Antisense
GCCATCTTGGAACTACCGGCACAGG 23 281 64 Antisense
GACGGTCTCCTGCAAAGTATGCTCA 422 377 96 Antisense
GTATGCTCAACTCGATGGGCTGTGA 264 455 112 Antisense
AGATCAAGTGGTTAGCCGTGTCGAA 94 65 147 Antisense
GATCTACGAACGAACGGTTGCTGAT 80 415 174 Antisense
GACGAGTCAGCGGATGCTGTTGTTG 379 379 217 Antisense
TGCTGTTGTTGATCATATTTGCACA 310 583 231 Antisense
GCGGTCACTCAAAGGCATCATATTC 211 293 260 Antisense
CAAACAGTATTCTATACATGCCTGA 488 191 316 Antisense
Sequence Source Affymetrix Proprietary Database