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[192502_at] carnitine palmitoyltransferase like

Description F09F3.9 /REP_DB=WormBase Gene ID /WP=CE27752 /TR=P90827 /GB=CAB03394.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carnitine palmitoyltransferase like
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 08      4grp_highest_8_8 > 42      4grp_high_8_8 > 41      6grp_highest_nonorm > 60      6grp_total > 09      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 621
1 2 3 4 range
A 666.4
(3)
P 		186
(-2.2)
P 		234.3
(-1.7)
P 		116.1
(-3)
P 		550
B 487.6
(3)
P 		247.8
(-0.5)
P 		241.4
(-0.6)
P 		73
(-3)
P 		415
C 694.2
(3)
P 		313.9
(-0.9)
P 		320.1
(-0.9)
P 		115.7
(-3)
P 		579
avr 616.1
(3) 		249.2
(-1.3) 		265.3
(-1.1) 		101.6
(-3) 		515

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 706
1 2 3 4 5 6 range
A 704.3
(3)
P 		265.8
(-2.6)
P 		310.4
(-2.1)
P 		381.4
(-1.1)
P 		334.8
(-1.7)
P 		236.6
(-3)
P 		468
B 942.5
(3)
P 		314.7
(-2.4)
P 		251.2
(-3)
P 		452.8
(-1.3)
P 		407.3
(-1.6)
P 		274.3
(-2.8)
P 		691
C 781.9
(3)
P 		287.6
(-2.5)
P 		242.3
(-3)
P 		435.8
(-0.8)
P 		331.7
(-2)
P 		337.4
(-1.9)
P 		540
avr 809.6
(3) 		289.4
(-2.8) 		268
(-3) 		423.3
(-1.3) 		357.9
(-2) 		282.8
(-2.8) 		542
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 242.6
(3)
P 		40.4
(-2.4)
P 		61.3
(-1.8)
P 		17
(-3)
P 		226
B 155.5
(3)
P 		61.2
(-1)
P 		55.9
(-1.3)
P 		15.6
(-3)
P 		140
C 229.8
(3)
P 		90.3
(-1)
P 		111.6
(-0.4)
P 		19.5
(-3)
P 		210
avr 209.3
(3) 		64
(-1.5) 		76.3
(-1.2) 		17.4
(-3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 129.8
(3)
P 		94.5
(0.1)
P 		67.6
(-2.2)
P 		96.7
(0.2)
P 		101
(0.6)
P 		57.6
(-3)
P 		72
B 327.9
(3)
P 		104.7
(-2)
P 		61
(-3)
P 		119.9
(-1.7)
P 		165.5
(-0.7)
P 		102.3
(-2.1)
P 		267
C 289.8
(3)
P 		87.7
(-2.3)
P 		61.7
(-3)
P 		87.6
(-2.3)
P 		107.3
(-1.8)
P 		113
(-1.7)
P 		228
avr 249.2
(3) 		95.6
(-2) 		63.4
(-3) 		101.4
(-1.8) 		124.6
(-1) 		91
(-2.1) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192502_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14185
Sequence Type Exemplar sequence
Representative Public ID F09F3.9 NCBI
Target Description F09F3.9 /REP_DB=WormBase Gene ID /WP=CE27752 /TR=P90827 /GB=CAB03394.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=carnitine palmitoyltransferase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171549(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171549 NCBI Caenorhabditis elegans F09F3.9 (F09F3.9) mRNA, complete cds. 10/11 None
F09F3.9.1 ENSEMBL cdna:known chromosome:CEL140:V:13875761:13878802:1 gene:F09F3.9 10/11 None
F09F3.9.2 ENSEMBL cdna:known chromosome:CEL140:V:13875784:13878464:1 gene:F09F3.9 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016892 8/11 Cross Hyb Matching Probes None
GENEFINDER00000016907 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13875789-13878414(+) 100.0 100.0
Public Domain and Genome References
Gene Title carnitine palmitoyltransferase like
Gene Symbol cpt-5
Ensembl F09F3.9
Entrez Gene 179881 Entrez gene
SwissProt P90827 EMBL-EBI
WormBase CE30341 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03394 Hypothetical protein F09F3.9 [Caenorhabditis elegans] emb|CAB02911.3| Hypothetical protein F09F3.9 [Caenorhabditis elegans] ref|NP_741637.1| F09F3.9 [Caenorhabditis elegans] 0.0
blast NP_504348 K11D12.4 [Caenorhabditis elegans] gb|AAB94222.1| Hypothetical protein K11D12.4 [Caenorhabditis elegans] 0.0
blast AAK29914 Hypothetical protein Y48G9A.10 [Caenorhabditis elegans] ref|NP_497498.2| Y48G9A.10 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192502_AT
atggcaattcagttggcttattacaaagcaggcgatcaaggaaagttcactcaaacatat
gaaccaggttcaattagattctacgcaaattcaagaacagaaactttgagaccagtaaca
aaagcgtcttgtgaatttgttgaagccatgctctcggataaatctgatatagcctcccgc
aggaagttattgaaagaagcttgtgaagttcatgtgaataactgtaaagaaatcatgcta
ggaaatggatttgatcgtcatctatttgtactatgtgttcttgcaaaaggacttggatac
gaaagtccattcctcaatttcttccaaagtcagaagtggcttctgagtaccagtaatatt
cccaatatgacaaactcgattgatgaagattcttcaattgacaagataatgcttggtggt
tcatttggagctgtagcacaagatgggtacggaatctgttaccgattcggaggaaatcaa
gcaattcttgttcatattacttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCAATTCAGTTGGCTTATTACA 364 53 1603 Antisense
GCAGGCGATCAAGGAAAGTTCACTC 100 311 1630 Antisense
GAAGCCATGCTCTCGGATAAATCTG 369 345 1744 Antisense
GATATAGCCTCCCGCAGGAAGTTAT 137 425 1768 Antisense
GGATTTGATCGTCATCTATTTGTAC 666 509 1849 Antisense
GATACGAAAGTCCATTCCTCAATTT 484 423 1898 Antisense
CATTCCTCAATTTCTTCCAAAGTCA 393 217 1910 Antisense
GAAGTGGCTTCTGAGTACCAGTAAT 571 335 1935 Antisense
TGGTGGTTCATTTGGAGCTGTAGCA 461 553 2016 Antisense
GATGGGTACGGAATCTGTTACCGAT 461 407 2044 Antisense
GCAATTCTTGTTCATATTACTTCGT 686 321 2083 Antisense
Sequence Source Affymetrix Proprietary Database