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[192500_at] IG-like C2-type domain

Description C14F5.2 /REP_DB=WormBase Gene ID /WP=CE01781 /GEN=zig-3 /TR=Q09970 /GB=AAA68401.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=IG-like C2-type domain
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_high_8_8 > 19      6grp_highest_nonorm > 62      6grp_total > 71      4grp_total > 21      6grp_highest_sub > 04      6grp_cgc > 85      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 274.2
(0.5)
P 		271
(0.4)
P 		155.2
(-3)
P 		360.4
(3)
P 		205
B 308
(2.9)
P 		251.4
(0.9)
P 		140.3
(-3)
M 		311.9
(3)
P 		172
C 313.6
(0.7)
P 		242.4
(-1.2)
P 		176.1
(-3)
M 		401.7
(3)
P 		226
avr 298.6
(1.2) 		254.9
(-0.1) 		157.2
(-3) 		358
(3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 666
1 2 3 4 5 6 range
A 454.7
(-0.5)
P 		305.1
(-1.9)
P 		567
(0.5)
P 		847.9
(3)
P 		530.2
(0.1)
P 		182.7
(-3)
P 		665
B 402.3
(0.2)
P 		295.7
(-1.3)
P 		412.8
(0.4)
P 		590.4
(3)
P 		541.3
(2.3)
P 		182.3
(-3)
P 		408
C 299.9
(-2.3)
P 		239.1
(-2.9)
P 		496.8
(-0.3)
P 		829.5
(3)
P 		498.2
(-0.3)
P 		225.6
(-3)
P 		604
avr 385.6
(-1) 		280
(-2.1) 		492.2
(0.2) 		755.9
(3) 		523.2
(0.5) 		196.9
(-3) 		559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 99.8
(3)
P 		58.8
(-1.2)
P 		40.6
(-3)
P 		52.8
(-1.8)
P 		59
B 98.2
(3)
P 		62.1
(-0.3)
P 		32.5
(-3)
M 		66.5
(0.1)
P 		66
C 103.8
(3)
P 		69.7
(-1.8)
P 		61.4
(-3)
M 		67.7
(-2.1)
P 		42
avr 100.6
(3) 		63.5
(-1) 		44.8
(-3) 		62.3
(-1.1) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 83.8
(-1.6)
P 		108.5
(-0.7)
P 		123.5
(-0.2)
P 		215.1
(3)
P 		160
(1.1)
P 		44.5
(-3)
P 		171
B 140
(-0.2)
P 		98.4
(-1.8)
P 		100.2
(-1.7)
P 		156.4
(0.5)
P 		219.9
(3)
P 		68
(-3)
P 		152
C 111.2
(-0.6)
P 		73
(-3)
P 		126.4
(0.4)
P 		166.8
(3)
P 		161.2
(2.6)
P 		75.5
(-2.8)
P 		94
avr 111.7
(-0.5) 		93.3
(-1.4) 		116.7
(-0.2) 		179.4
(2.9) 		180.4
(3) 		62.7
(-3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16700
Sequence Type Exemplar sequence
Representative Public ID C14F5.2 NCBI
Target Description C14F5.2 /REP_DB=WormBase Gene ID /WP=CE01781 /GEN=zig-3 /TR=Q09970 /GB=AAA68401.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=IG-like C2-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076935 NCBI Caenorhabditis elegans 2 (Zwei) IG-domain protein family member (zig-3) (zig-3) mRNA, complete cds. 11/11 None
SNAP00000042703 ENSEMBL cdna:SNAP chromosome:CEL140:X:7930739:7931595:1 11/11 None
GENEFINDER00000042708 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7930739:7931595:1 11/11 None
C14F5.2 ENSEMBL cdna:known chromosome:CEL140:X:7930739:7931595:1 gene:C14F5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7930737-7931594(+) 100.0 100.0
Public Domain and Genome References
Gene Title IG-like C2-type domain
Gene Symbol zig-3
Ensembl C14F5.2
Entrez Gene 192088 Entrez gene
SwissProt Q09970 EMBL-EBI
WormBase CE01781 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68401 2 (zwei) ig-domain protein protein 3 [Caenorhabditis elegans] ref|NP_509336.1| 2 (Zwei) IG-domain protein family member (zig-3) [Caenorhabditis elegans] gb|AAL59608.1| secreted 2-immunoglobulin-domain protein ZIG-3 [Caenorhabditis elegans] 1.0E-142
blast CAE70323 Hypothetical protein CBG16851 [Caenorhabditis briggsae] 8.0E-70
blast CAE63027 Hypothetical protein CBG07284 [Caenorhabditis briggsae] 3.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.3E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.7E-5
Sequence
Target Sequence 
>C. ELEGANS:192500_AT
aactcttcgatgtgacgtactgtccacaccgactggagtcatttactgggaaaaggatgg
ccaacgaatccagggagataaagagcttaatgtttttgaaaaagtattgaacgctatggg
tcctacagtcgagtcaggtatcatcaccagtagctaccaaatcccatgcgcaaatctcca
tcatattggatcctataagtgtgtagccacaaatgggcacgataccgtcgaaagctctgc
aaaaatctcagttgaaggacaaactgttaagtgtaaatcaacgcgccgctcagccccagt
aatcacaatgtctactgaatcccgatttgaacttcaagacaatgcagctactcttatctg
ccgtgctgatcgtagagccaattggaattggatgttcgaagacaagaaaatagattttga
cagcggccgatatgaactacttccatccggtgatcttctcatccggaaaatccagtggtc
agacatgggttcatacttttgcattgctcataacaagtatggagagtcccgtggtgaaac
cttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCTTCGATGTGACGTACTGTCC 392 139 195 Antisense
TACTGTCCACACCGACTGGAGTCAT 484 647 212 Antisense
ACGCTATGGGTCCTACAGTCGAGTC 694 91 305 Antisense
GGCACGATACCGTCGAAAGCTCTGC 529 535 410 Antisense
CTCAGCCCCAGTAATCACAATGTCT 314 229 483 Antisense
AATGCAGCTACTCTTATCTGCCGTG 463 165 535 Antisense
ATCTGCCGTGCTGATCGTAGAGCCA 495 33 550 Antisense
GACAGCGGCCGATATGAACTACTTC 319 367 613 Antisense
TCCATCCGGTGATCTTCTCATCCGG 298 591 636 Antisense
TGGGTTCATACTTTTGCATTGCTCA 695 553 680 Antisense
TGGAGAGTCCCGTGGTGAAACCTTC 448 547 714 Antisense
Sequence Source Affymetrix Proprietary Database