[Home] | [Total List]

[192498_at] Zinc finger, C4 type (two domains)

Description E03H4.6 /REP_DB=WormBase Gene ID /WP=CE09133 /TR=O17748 /GB=CAB04030.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 28      4grp_total > 20      6grp_cgc > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 0.1
(-3)
A 		3.4
(1.3)
A 		2.5
(0.1)
A 		4.7
(3)
A 		5
B 13.5
(-0.6)
A 		1
(-3)
A 		0.9
(-3)
A 		32.7
(3)
A 		32
C 2.9
(-2.1)
A 		12.8
(3)
A 		2
(-2.5)
A 		1.1
(-3)
A 		12
avr 5.5
(-1) 		5.7
(-0.9) 		1.8
(-3) 		12.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.1
(0.3)
A 		1.6
(-1.9)
A 		1
(-2.4)
A 		1.1
(-2.3)
A 		7.3
(3)
A 		0.3
(-3)
A 		7
B 2.2
(-2)
A 		0.6
(-2.8)
A 		8.6
(1)
A 		0.1
(-3)
A 		1.5
(-2.3)
A 		12.7
(3)
A 		13
C 15.6
(3)
A 		0.9
(-2.9)
A 		0.6
(-3)
A 		1.3
(-2.7)
A 		1.4
(-2.7)
A 		0.7
(-3)
A 		15
avr 7.3
(3) 		1
(-2.8) 		3.4
(-0.6) 		0.8
(-3) 		3.4
(-0.6) 		4.6
(0.5) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0
(-3)
A 		0.7
(3)
A 		0.7
(3)
A 		0.7
(3)
A 		1
B 4.3
(0.6)
A 		0.2
(-3)
A 		0.2
(-3)
A 		7
(3)
A 		7
C 1
(-1.6)
A 		3.7
(3)
A 		0.7
(-2.1)
A 		0.2
(-3)
A 		4
avr 1.8
(0.7) 		1.5
(-0.1) 		0.5
(-3) 		2.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.8
(-1)
A 		0.6
(-1.6)
A 		0.2
(-2.7)
A 		0.3
(-2.4)
A 		2.2
(3)
A 		0.1
(-3)
A 		2
B 0.8
(-2)
A 		0.2
(-2.7)
A 		2.1
(-0.3)
A 		0
(-3)
A 		0.6
(-2.2)
A 		4.7
(3)
A 		5
C 5.8
(3)
A 		0.3
(-2.8)
A 		0.1
(-3)
A 		0.3
(-2.8)
A 		0.4
(-2.7)
A 		0.2
(-2.9)
A 		6
avr 2.5
(3) 		0.4
(-2.5) 		0.8
(-1.4) 		0.2
(-3) 		1.1
(-0.7) 		1.7
(0.9) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192498_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.489
Sequence Type Exemplar sequence
Representative Public ID E03H4.6 NCBI
Target Description E03H4.6 /REP_DB=WormBase Gene ID /WP=CE09133 /TR=O17748 /GB=CAB04030.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060748(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060748 NCBI Caenorhabditis elegans E03H4.6 (E03H4.6) mRNA, complete cds. 11/11 None
GENEFINDER00000031048 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12423950:12427987:1 10/11 None
SNAP00000031039 ENSEMBL cdna:SNAP chromosome:CEL140:I:12425884:12427022:1 10/11 None
E03H4.6 ENSEMBL cdna:known chromosome:CEL140:I:12425095:12426746:1 gene:E03H4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12425025-12426677(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-174
Ensembl E03H4.6
Entrez Gene 184021 Entrez gene
SwissProt O17748 EMBL-EBI
WormBase CE09133 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04030 Hypothetical protein E03H4.6 [Caenorhabditis elegans] ref|NP_493149.1| E03H4.6 [Caenorhabditis elegans] 0.0
blast CAB04030 Hypothetical protein E03H4.6 [Caenorhabditis elegans] ref|NP_493149.1| E03H4.6 [Caenorhabditis elegans] 1.0E-178
blast CAB05622 Hypothetical protein T15D6.6 [Caenorhabditis elegans] ref|NP_493137.2| Nuclear Hormone Receptor family member (nhr-77) [Caenorhabditis elegans] 1.0E-153
blast CAB05462 Hypothetical protein C54C8.1 [Caenorhabditis elegans] ref|NP_493156.2| C54C8.1 [Caenorhabditis elegans] 1.0E-109
blast CAB04030 Hypothetical protein E03H4.6 [Caenorhabditis elegans] ref|NP_493149.1| E03H4.6 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 8.0E-4
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.7E-12
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.0015
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.0023
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.7E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493149.1 1 7-29
E03H4.6 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:192498_AT
tttggaaatcactagtattcacaataaactagcagctgaaatatgtaaaacttgtcctgg
agtcgatctacttgataatgaggatattttgactatacggaaatattttcaattttccaa
tgtttggattgaatctgcatggaattatttgatgtcagcagataaacatgttcaaattga
tgactcggaacttgacttaacactgcttaaattcattaaccaagtaaaatcaacgctgct
tgtctcactttcccagctgaaattcaatactatcgagtttgcagcattcaaatcaatttg
catctggaaattggtgtatcatgggacaagccgagccatgaaaattattgcacaagaaca
ttatgaaggtgttgcaaaagctttgaacgattattatcaggtatattctcaaggtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGAAATCACTAGTATTCACAAT 287 667 696 Antisense
GTATTCACAATAAACTAGCAGCTGA 396 453 710 Antisense
TGAAATATGTAAAACTTGTCCTGGA 502 571 732 Antisense
GCATGGAATTATTTGATGTCAGCAG 312 311 832 Antisense
CGGAACTTGACTTAACACTGCTTAA 66 243 881 Antisense
AACACTGCTTAAATTCATTAACCAA 103 137 894 Antisense
AAAATCAACGCTGCTTGTCTCACTT 271 133 921 Antisense
CTCACTTTCCCAGCTGAAATTCAAT 527 227 939 Antisense
GGTGTATCATGGGACAAGCCGAGCC 685 499 1008 Antisense
GCAAAAGCTTTGAACGATTATTATC 347 319 1069 Antisense
ATTATCAGGTATATTCTCAAGGTAT 591 13 1088 Antisense
Sequence Source Affymetrix Proprietary Database