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[192496_at] short-chain alcohol dehydrogenase

Description ZK816.5 /REP_DB=WormBase Gene ID /WP=CE05118 /TR=Q23612 /GB=AAA82327.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=short-chain alcohol dehydrogenase
Cluster 6grp_total > 88      4grp_total > 43      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 23.2
(-1.6)
A 		62
(3)
A 		11.4
(-3)
A 		37
(0)
A 		51
B 2.2
(-3)
A 		62.6
(3)
A 		3.8
(-2.8)
A 		9.7
(-2.3)
A 		60
C 41.5
(3)
A 		15.5
(-3)
A 		23.7
(-1.1)
A 		28.2
(-0.1)
A 		26
avr 22.3
(-1.3) 		46.7
(3) 		13
(-3) 		25
(-0.9) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 9.8
(-2.2)
A 		21.5
(-0.1)
A 		27.4
(1)
A 		10.1
(-2.2)
A 		5.5
(-3)
A 		38.2
(3)
A 		33
B 8.9
(-2.7)
A 		7
(-3)
A 		15.8
(-1.4)
A 		21.1
(-0.5)
A 		23.5
(-0.1)
A 		40.6
(3)
A 		34
C 15.5
(-1.9)
A 		8.1
(-2.5)
A 		2.9
(-3)
A 		8.4
(-2.5)
A 		68.8
(3)
A 		62.2
(2.4)
A 		66
avr 11.4
(-3) 		12.2
(-2.9) 		15.4
(-2.3) 		13.2
(-2.7) 		32.6
(0.6) 		47
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 8.4
(0.1)
A 		13.5
(3)
A 		3
(-3)
A 		5.4
(-1.6)
A 		11
B 0.7
(-3)
A 		15.5
(3)
A 		0.9
(-2.9)
A 		2.1
(-2.4)
A 		15
C 13.7
(3)
A 		4.4
(-3)
A 		8.2
(-0.5)
A 		4.8
(-2.7)
A 		9
avr 7.6
(0) 		11.1
(3) 		4
(-3) 		4.1
(-2.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.8
(-2.9)
A 		7.7
(1.7)
A 		6
(0.4)
A 		2.6
(-2.3)
A 		1.7
(-3)
A 		9.3
(3)
A 		8
B 3.1
(-2.6)
A 		2.3
(-3)
A 		3.8
(-2.3)
A 		5.6
(-1.5)
A 		9.6
(0.4)
A 		15.1
(3)
A 		13
C 5.7
(-1.6)
A 		2.5
(-2.5)
A 		0.7
(-3)
A 		1.7
(-2.7)
A 		22.3
(3)
A 		20.8
(2.6)
A 		22
avr 3.5
(-2.9) 		4.2
(-2.5) 		3.5
(-2.9) 		3.3
(-3) 		11.2
(1) 		15.1
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18137
Sequence Type Exemplar sequence
Representative Public ID ZK816.5 NCBI
Target Description ZK816.5 /REP_DB=WormBase Gene ID /WP=CE05118 /TR=Q23612 /GB=AAA82327.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=short-chain alcohol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076179(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076179 NCBI Caenorhabditis elegans DeHydrogenases, Short chain family member (dhs-26) (dhs-26) mRNA, complete cds. 11/11 None
SNAP00000023562 ENSEMBL cdna:SNAP chromosome:CEL140:X:3360759:3362333:-1 11/11 None
GENEFINDER00000023570 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3360759:3362333:-1 11/11 None
ZK816.5 ENSEMBL cdna:known chromosome:CEL140:X:3360759:3362333:-1 gene:ZK816.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3360759-3362334(-) 100.0 100.0
Public Domain and Genome References
Gene Title short-chain alcohol dehydrogenase
Gene Symbol dhs-26
Ensembl ZK816.5
Entrez Gene 180624 Entrez gene
SwissProt Q23612 EMBL-EBI
WormBase CE39082 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508580 DeHydrogenases, Short chain family member (dhs-26) [Caenorhabditis elegans] 0.0
blast AAA82327 Dehydrogenases, short chain protein 26 [Caenorhabditis elegans] 0.0
blast CAE68415 Hypothetical protein CBG14194 [Caenorhabditis briggsae] 1.0E-157
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508580.1 1 158-180
ZK816.5 1 158-180
SNAP00000023562 1 154-176
GENEFINDER00000023570 1 154-176
Sequence
Target Sequence 
>C. ELEGANS:192496_AT
atgtgggacttcgcaaccaatactattgcagtgtatacggtactcgtataatgaggaaga
atgggatgaaaggtctgattgtgaatatcagctcgctgggtggaataatgtacttgttca
ccgtcgcctatggtgttggaaaaatggcacttgacagaatgtcttcggatatggcacaag
agttgcaggacactggcattactgtaatctcactttggccttcggcagttaaaactgagc
ttatcacaaatatgattgaaacatctgcaggatcttggggcgcgacggaaaacaaaatgt
tcctaaacggagaatcaaccgagtattgcggaaaagctgtggtggcaattgctgctgatc
cgaagaagaagtattggaatggatcaacattaatcacaactgatatggggaactattact
cttatactgatattgacggccgaatcccaaccaatatgagacaactccgaggactgctca
gcctagccgggtaccattcgatggcaggttggtgtcctgagtgggtcaatcttcctggat
gggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGGGACTTCGCAACCAATACTA 328 49 413 Antisense
GTTCACCGTCGCCTATGGTGTTGGA 255 443 528 Antisense
GAGTTGCAGGACACTGGCATTACTG 555 397 592 Antisense
TTACTGTAATCTCACTTTGGCCTTC 131 669 611 Antisense
AAACATCTGCAGGATCTTGGGGCGC 529 127 671 Antisense
GTGGTGGCAATTGCTGCTGATCCGA 240 489 751 Antisense
GGCCGAATCCCAACCAATATGAGAC 504 543 850 Antisense
TGAGACAACTCCGAGGACTGCTCAG 268 569 869 Antisense
CCTAGCCGGGTACCATTCGATGGCA 120 269 894 Antisense
GGTTGGTGTCCTGAGTGGGTCAATC 21 509 919 Antisense
GTGGGTCAATCTTCCTGGATGGGCA 449 477 933 Antisense
Sequence Source Affymetrix Proprietary Database