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[192490_at] Zinc finger, C2H2 type (4 domains)

Description ZK337.2 /REP_DB=WormBase Gene ID /WP=CE16720 /TR=O46016 /GB=CAB05008.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (4 domains)
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 30      6grp_total > 16      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1036
1 2 3 4 range
A 1493.7
(3)
P 		751.2
(-1.7)
P 		542
(-3)
P 		1290.6
(1.7)
P 		952
B 1577.6
(3)
P 		841.7
(-1.5)
P 		596.8
(-3)
P 		1541.7
(2.8)
P 		981
C 1371.5
(3)
P 		869.8
(-0.7)
P 		568
(-3)
P 		1172
(1.5)
P 		804
avr 1480.9
(3) 		820.9
(-1.3) 		568.9
(-3) 		1334.8
(2) 		912

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1226
1 2 3 4 5 6 range
A 1626.1
(3)
P 		1120.9
(0.4)
P 		473.8
(-2.8)
P 		441.2
(-3)
P 		547.7
(-2.5)
P 		504.4
(-2.7)
P 		1185
B 1589.7
(3)
P 		964.6
(-0.2)
P 		441.7
(-2.8)
P 		550.6
(-2.2)
P 		466.4
(-2.7)
P 		401.5
(-3)
P 		1188
C 1471
(3)
P 		829
(-0.6)
P 		565
(-2.1)
P 		412.8
(-2.9)
P 		638.6
(-1.7)
P 		399.8
(-3)
P 		1071
avr 1562.3
(3) 		971.5
(-0.1) 		493.5
(-2.7) 		468.2
(-2.8) 		550.9
(-2.4) 		435.2
(-3) 		1127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 406
1 2 3 4 range
A 543.9
(3)
P 		163.1
(-2.7)
P 		141.7
(-3)
P 		188.9
(-2.3)
P 		402
B 503.1
(3)
P 		207.9
(-1.9)
P 		138.3
(-3)
P 		328.5
(0.1)
P 		365
C 454
(3)
P 		250.1
(-1.8)
P 		198
(-3)
P 		197.6
(-3)
P 		256
avr 500.3
(3) 		207
(-2.2) 		159.3
(-3) 		238.3
(-1.6) 		341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 470
1 2 3 4 5 6 range
A 299.8
(1)
P 		398.7
(3)
P 		103.2
(-3)
P 		111.9
(-2.8)
P 		165.3
(-1.7)
P 		122.8
(-2.6)
P 		296
B 553.1
(3)
P 		321.1
(-0.1)
P 		107.3
(-3)
P 		145.8
(-2.5)
P 		189.5
(-1.9)
P 		149.7
(-2.4)
P 		446
C 545.2
(3)
P 		252.9
(-0.8)
P 		143.8
(-2.2)
P 		83
(-3)
P 		206.6
(-1.4)
P 		133.8
(-2.3)
P 		462
avr 466
(3) 		324.2
(0.6) 		118.1
(-2.9) 		113.6
(-3) 		187.1
(-1.7) 		135.4
(-2.6) 		352
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1012
Sequence Type Exemplar sequence
Representative Public ID ZK337.2 NCBI
Target Description ZK337.2 /REP_DB=WormBase Gene ID /WP=CE16720 /TR=O46016 /GB=CAB05008.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (4 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061210 NCBI Caenorhabditis elegans ZK337.2 (ZK337.2) mRNA, complete cds. 11/11 None
GENEFINDER00000024764 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14983542:14991897:1 11/11 None
SNAP00000024735 ENSEMBL cdna:SNAP chromosome:CEL140:I:14987072:14988579:1 11/11 None
ZK337.2 ENSEMBL cdna:known chromosome:CEL140:I:14983537:14988756:1 gene:ZK337.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14987302-14988510(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (4 domains)
Ensembl ZK337.2
Entrez Gene 173366 Entrez gene
SwissProt O46016 EMBL-EBI
WormBase CE30572 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05008 Hypothetical protein ZK337.2 [Caenorhabditis elegans] ref|NP_493611.2| ZK337.2 [Caenorhabditis elegans] 0.0
blast CAE72619 Hypothetical protein CBG19812 [Caenorhabditis briggsae] 1.0E-175
blast CAE72619 Hypothetical protein CBG19812 [Caenorhabditis briggsae] 1.0E-171
blast T23706 hypothetical protein M04C7.2 - Caenorhabditis elegans 1.0E-151
blast CAE72619 Hypothetical protein CBG19812 [Caenorhabditis briggsae] 1.0E-128
blast XP_394246 PREDICTED: similar to CG12296-PA [Apis mellifera] 2.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.3E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.3E-5
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.0E-8
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 3.6E-65
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.3E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.3E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.3E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.3E-5
Sequence
Target Sequence 
>C. ELEGANS:192490_AT
gcaggcgtttgcggtacatgatcgattagctaagcatatagcgtctcgacatcgccagcg
aagttgtacattagatgatgcttctaaagtccacaaatgcaacatgtgctcaaaaagctt
ctcgagaagtgatatgctgacaaggcacatgcgtcttcacacgggagcaaaaccatacag
ttgtccgacatgtaatcaagtattctctcgttctgaccatttatccactcatctgagaac
acatacaggcgaaaaaccatacgcgtgtccaatgtgtaattattcagcgagccgccgcga
catgatctcccgtcacatgcgaactcattcactgacagatgactccagtatctcaactcc
aatatctcaattgtcaatccgaagtgcaactacttcaccactaccaccaaagatcgggtc
aactgcaaccgttgaaattggttctggattgttgtccgcattcaaaccaatactttccgc
atcatcatcaaatcttctttccgtgtcttcacccttccaatcactttctctctcaacacc
accatctccatcgttcgcacctattgtactcaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGCGTTTGCGGTACATGATCGA 46 311 189 Antisense
AGCATATAGCGTCTCGACATCGCCA 158 77 221 Antisense
GCTGACAAGGCACATGCGTCTTCAC 28 297 324 Antisense
TGACCATTTATCCACTCATCTGAGA 587 569 402 Antisense
AAACCATACGCGTGTCCAATGTGTA 403 125 442 Antisense
CCGTCACATGCGAACTCATTCACTG 196 265 498 Antisense
TGACTCCAGTATCTCAACTCCAATA 97 571 528 Antisense
TTCACCACTACCACCAAAGATCGGG 410 687 582 Antisense
GGATTGTTGTCCGCATTCAAACCAA 460 507 634 Antisense
AATACTTTCCGCATCATCATCAAAT 696 171 657 Antisense
CGTTCGCACCTATTGTACTCAATCG 539 247 740 Antisense
Sequence Source Affymetrix Proprietary Database