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[192485_at] Toxocara surface glycoprotein like

Description F15A4.6 /REP_DB=WormBase Gene ID /WP=CE15843 /TR=O17815 /GB=CAB02944.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Toxocara surface glycoprotein like
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 26      6grp_total > 61      4grp_total > 61      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4508
1 2 3 4 range
A 4997.4
(3)
P 		4517.7
(2.3)
P 		4085.4
(1.6)
P 		1037.7
(-3)
P 		3960
B 4852
(3)
P 		4334.4
(2.2)
P 		4555.7
(2.6)
P 		785.5
(-3)
P 		4067
C 5293.6
(3)
P 		4513.9
(1.9)
P 		3550.9
(0.6)
P 		927.3
(-3)
P 		4366
avr 5047.7
(3) 		4455.3
(2.1) 		4064
(1.6) 		916.8
(-3) 		4131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6069
1 2 3 4 5 6 range
A 4270.4
(-1)
P 		4870.7
(-0.4)
P 		8358.3
(3)
P 		7321.8
(2)
P 		4738.2
(-0.6)
P 		2289.3
(-3)
P 		6069
B 4418.2
(-0.4)
P 		5282.2
(0.7)
P 		6952.9
(3)
P 		6032.5
(1.8)
P 		6191.6
(2)
P 		2529.8
(-3)
P 		4423
C 4278.7
(-1.1)
P 		4987.9
(-0.2)
P 		5532.6
(0.5)
P 		7449.6
(3)
P 		4716.5
(-0.5)
P 		2781.4
(-3)
P 		4668
avr 4322.4
(-0.6) 		5046.9
(0.4) 		6947.9
(3) 		6934.6
(3) 		5215.4
(0.6) 		2533.5
(-3) 		4414
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1668
1 2 3 4 range
A 1819.5
(3)
P 		980.7
(-0)
P 		1068
(0.3)
P 		151.9
(-3)
P 		1668
B 1547.2
(3)
P 		1070.5
(0.9)
P 		1055.7
(0.9)
P 		167.4
(-3)
P 		1380
C 1752.3
(3)
P 		1297.8
(1.3)
P 		1237.6
(1.1)
P 		156.4
(-3)
P 		1596
avr 1706.3
(3) 		1116.3
(0.7) 		1120.4
(0.7) 		158.6
(-3) 		1548

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1958
1 2 3 4 5 6 range
A 787.2
(-1.9)
P 		1732.3
(2.4)
P 		1820.3
(2.8)
P 		1857
(3)
P 		1429.8
(1)
P 		557.4
(-3)
P 		1300
B 1537.3
(-0.7)
P 		1758.2
(0.1)
P 		1688.4
(-0.2)
P 		1597.8
(-0.5)
P 		2515.6
(3)
P 		943.4
(-3)
P 		1572
C 1585.9
(3)
P 		1522
(2.4)
P 		1408.1
(1.4)
P 		1498.1
(2.2)
P 		1526.2
(2.5)
P 		931.1
(-3)
P 		655
avr 1303.5
(-0.1) 		1670.8
(2.1) 		1638.9
(1.9) 		1651
(2) 		1823.9
(3) 		810.6
(-3) 		1013
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3816
Sequence Type Exemplar sequence
Representative Public ID F15A4.6 NCBI
Target Description F15A4.6 /REP_DB=WormBase Gene ID /WP=CE15843 /TR=O17815 /GB=CAB02944.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Toxocara surface glycoprotein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064257(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064257 NCBI Caenorhabditis elegans F15A4.6 (F15A4.6) mRNA, complete cds. 11/11 None
SNAP00000042549 ENSEMBL cdna:SNAP chromosome:CEL140:II:12471727:12472091:1 9/11 None
F15A4.6 ENSEMBL cdna:known chromosome:CEL140:II:12471710:12472993:1 gene:F15A4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042558 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12471723-12472916(+) 100.0 100.0
Public Domain and Genome References
Gene Title Toxocara surface glycoprotein like
Ensembl F15A4.6
Entrez Gene 174887 Entrez gene
SwissProt O17815 EMBL-EBI
WormBase CE15843 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02944 Hypothetical protein F15A4.6 [Caenorhabditis elegans] ref|NP_496658.1| F15A4.6 [Caenorhabditis elegans] 1.0E-83
blast CAE73530 Hypothetical protein CBG20993 [Caenorhabditis briggsae] 5.0E-54
blast CAB02944 Hypothetical protein F15A4.6 [Caenorhabditis elegans] ref|NP_496658.1| F15A4.6 [Caenorhabditis elegans] 5.0E-52
blast CAE57037 Hypothetical protein CBG24920 [Caenorhabditis briggsae] 2.0E-40
blast CAE73530 Hypothetical protein CBG20993 [Caenorhabditis briggsae] 8.0E-31
blast CAE73567 Hypothetical protein CBG21037 [Caenorhabditis briggsae] 5.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.7E-15
Pfam IPR007026 EMBL-EBI CC domain 6.1E-7
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.5E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 4.1E-15
Sequence
Target Sequence 
>C. ELEGANS:192485_AT
gtttttggctattctggctttcatcgtcgtgtctgttggggctcagacaacatgcaatgc
aatcggtcttcttggtccatcagttggtgggttatgcccaagtggctacactgtcgtcac
tagtggagactgttgtgccagtgaccaagttgtcacgtgtgctgacaagaccaatgccaa
tggtgtcaatgagtgccctggattgaagagctactgtaacaatagtcagtacaagacttt
gatgacacaacaatgcgcgaaaacttgcggattttgcaccggaactccctcaacctgcgc
agaccttgtaaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTTGGCTATTCTGGCTTTCATC 282 449 21 Antisense
TGGGGCTCAGACAACATGCAATGCA 355 553 57 Antisense
GCAATGCAATCGGTCTTCTTGGTCC 549 319 74 Antisense
GGTCCATCAGTTGGTGGGTTATGCC 650 501 94 Antisense
AAGTGGCTACACTGTCGTCACTAGT 137 155 120 Antisense
CTGTTGTGCCAGTGACCAAGTTGTC 381 237 150 Antisense
GTGTGCTGACAAGACCAATGCCAAT 429 487 177 Antisense
GCCAATGGTGTCAATGAGTGCCCTG 566 275 196 Antisense
GTGCCCTGGATTGAAGAGCTACTGT 135 477 213 Antisense
GAAAACTTGCGGATTTTGCACCGGA 522 353 279 Antisense
TCAACCTGCGCAGACCTTGTAAACC 452 629 310 Antisense
Sequence Source Affymetrix Proprietary Database