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[192484_at] unc-7-like protein

Description R09F10.4 /REP_DB=WormBase Gene ID /WP=CE07438 /GEN=inx-5 /TR=SW:Q23027 /GB=AAC69093.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=unc-7-like protein
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 02      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 31      6grp_total > 24      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1355
1 2 3 4 range
A 1324.9
(3)
P 		1105.3
(1.7)
P 		1264
(2.6)
P 		294.6
(-3)
P 		1030
B 1327.5
(2.5)
P 		1339
(2.6)
P 		1420.4
(3)
P 		268.7
(-3)
P 		1152
C 1306.8
(1.9)
P 		1561.7
(3)
P 		1352.9
(2.1)
P 		206.7
(-3)
P 		1355
avr 1319.7
(2.9) 		1335.3
(2.9) 		1345.8
(3) 		256.7
(-3) 		1089

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1178
1 2 3 4 5 6 range
A 1176.9
(3)
P 		1107
(2.5)
P 		936.2
(1.2)
P 		730.4
(-0.3)
P 		466.6
(-2.3)
P 		376
(-3)
P 		801
B 1165.1
(3)
P 		1026.8
(1.9)
P 		873.5
(0.8)
P 		762.6
(-0.1)
P 		424.7
(-2.6)
P 		376.4
(-3)
P 		789
C 1538.6
(3)
P 		930.8
(-0.1)
P 		1081.9
(0.7)
P 		754.6
(-1)
P 		454.9
(-2.5)
P 		360.7
(-3)
P 		1178
avr 1293.5
(3) 		1021.5
(1.2) 		963.9
(0.9) 		749.2
(-0.5) 		448.7
(-2.5) 		371
(-3) 		923
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 448
1 2 3 4 range
A 482.4
(3)
P 		239.9
(-0.3)
P 		330.4
(0.9)
P 		43.1
(-3)
P 		439
B 423.3
(3)
P 		330.7
(1.5)
P 		329.1
(1.5)
P 		57.3
(-3)
P 		366
C 432.6
(2.5)
P 		449
(2.7)
P 		471.5
(3)
P 		34.9
(-3)
P 		437
avr 446.1
(3) 		339.9
(1.4) 		377
(2) 		45.1
(-3) 		401

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 479
1 2 3 4 5 6 range
A 217
(-0.5)
P 		393.7
(3)
P 		203.9
(-0.8)
P 		185.3
(-1.1)
P 		140.8
(-2)
P 		91.5
(-3)
P 		302
B 405.4
(3)
P 		341.8
(1.6)
P 		212.1
(-1.4)
P 		202
(-1.6)
P 		172.5
(-2.3)
P 		140.4
(-3)
P 		265
C 570.3
(3)
P 		284
(-0.8)
P 		275.4
(-0.9)
P 		151.7
(-2.6)
P 		147.2
(-2.6)
P 		120.8
(-3)
P 		450
avr 397.6
(3) 		339.8
(1.8) 		230.5
(-0.6) 		179.7
(-1.7) 		153.5
(-2.2) 		117.6
(-3) 		280
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192484_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16684
Sequence Type Exemplar sequence
Representative Public ID R09F10.4 NCBI
Target Description R09F10.4 /REP_DB=WormBase Gene ID /WP=CE07438 /GEN=inx-5 /TR=SW:Q23027 /GB=AAC69093.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=unc-7-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077002(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077002 NCBI Caenorhabditis elegans INneXin family member (inx-5) (inx-5) mRNA, complete cds. 11/11 None
SNAP00000002570 ENSEMBL cdna:SNAP chromosome:CEL140:X:8300300:8302312:-1 11/11 None
GENEFINDER00000002584 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8300300:8302312:-1 11/11 None
R09F10.4 ENSEMBL cdna:known chromosome:CEL140:X:8300004:8302319:-1 gene:R09F10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8300160-8302311(-) 100.0 100.0
Public Domain and Genome References
Gene Title unc-7-like protein
Gene Symbol inx-5
Ensembl R09F10.4
Entrez Gene 181086 Entrez gene
SwissProt Q23027 EMBL-EBI
WormBase CE33811 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_509403 INneXin family member (inx-5) [Caenorhabditis elegans] gb|AAC69093.2| Innexin protein 5 [Caenorhabditis elegans] sp|Q23027|INX5_CAEEL Innexin-5 0.0
blast CAE74879 Hypothetical protein CBG22739 [Caenorhabditis briggsae] 0.0
blast AAB95049 Innexin protein 13 [Caenorhabditis elegans] ref|NP_491212.1| INneXin family member (inx-13) [Caenorhabditis elegans] 2.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509403.2 3 106-128,196-218,286-308
R09F10.4 3 106-128,196-218,286-308
SNAP00000002570 5 20-42,63-85,100-122,190-212,280-302
GENEFINDER00000002584 3 106-128,196-218,286-308
Sequence
Target Sequence 
>C. ELEGANS:192484_AT
aaggtatacgtcttcttctggttctggcttcttttcgttgggttgttgaccgtttgctca
ttggcctactgggcggttatctacatgcttcaaagcgttggacgcaactttatctacagc
tatctccaacaaactccagaattccaaactgagcaagaaagaggcagctttgtcccagca
aactttgttgataagtgtctcaccccagacggagttttcatttctcgtcttgttcaacaa
aactctggcgatttgttcacttcaataatgcttggagagatgttcagtctatacagggcc
cgcgaggccgagaaggctcacaagaaggacgatgattcagctcttccagcttctgcacca
gtcgatcttcaagaagatgatgacgatgacactccattcccaccgccaactaaggcagtt
gctgagacgttgactagtgatgacgaagaagaagaaaccgacgtggatagccctgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGTATACGTCTTCTTCTGGTTCT 155 161 856 Antisense
TTGGGTTGTTGACCGTTTGCTCATT 403 709 893 Antisense
CTCATTGGCCTACTGGGCGGTTATC 362 227 912 Antisense
GGCGGTTATCTACATGCTTCAAAGC 468 541 927 Antisense
GCAACTTTATCTACAGCTATCTCCA 646 319 959 Antisense
AGAAAGAGGCAGCTTTGTCCCAGCA 294 73 1011 Antisense
TTGTTGATAAGTGTCTCACCCCAGA 201 703 1040 Antisense
AACTCTGGCGATTTGTTCACTTCAA 509 141 1096 Antisense
TATACAGGGCCCGCGAGGCCGAGAA 554 647 1145 Antisense
AGGACGATGATTCAGCTCTTCCAGC 675 55 1181 Antisense
GAAACCGACGTGGATAGCCCTGATA 453 357 1309 Antisense
Sequence Source Affymetrix Proprietary Database