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[192483_at]

Description Y43F4A.1 /REP_DB=WormBase Gene ID /WP=CE16622 /TR=O62446 /GB=CAB16471.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=zinc metallopeptidase (M8 family)
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      4grp_high_8_8 > 53      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 51      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 176.1
(-1.3)
P 		329.5
(3)
P 		272
(1.4)
P 		116.9
(-3)
P 		213
B 222.1
(-0.3)
P 		296.8
(1.8)
P 		340.4
(3)
P 		122
(-3)
P 		218
C 272.2
(0.5)
P 		398.9
(3)
P 		296.3
(0.9)
P 		100.4
(-3)
A 		299
avr 223.5
(-0.1) 		341.7
(3) 		302.9
(2) 		113.1
(-3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 296.9
(0.1)
P 		373.5
(3)
P 		294.7
(0.1)
P 		343.8
(1.9)
P 		333.4
(1.5)
P 		212.6
(-3)
P 		161
B 260.4
(-0.4)
P 		321.4
(1.1)
P 		267.3
(-0.2)
P 		402.7
(3)
P 		210.2
(-1.6)
P 		151.4
(-3)
P 		251
C 238.6
(-1.5)
P 		303.8
(1)
P 		296.5
(0.7)
P 		355.5
(3)
P 		234.3
(-1.7)
P 		201.2
(-3)
P 		154
avr 265.3
(-0.4) 		332.9
(1.8) 		286.2
(0.3) 		367.3
(3) 		259.3
(-0.6) 		188.4
(-3) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 64.1
(2.2)
P 		71.5
(3)
P 		71.1
(3)
P 		17.1
(-3)
P 		54
B 70.8
(2.1)
P 		73.3
(2.4)
P 		78.9
(3)
P 		26
(-3)
P 		53
C 90.1
(1.5)
P 		114.7
(3)
P 		103.3
(2.3)
P 		16.9
(-3)
A 		98
avr 75
(2) 		86.5
(3) 		84.4
(2.8) 		20
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 54.7
(-2.8)
P 		132.8
(3)
P 		64.2
(-2.1)
P 		87.2
(-0.4)
P 		100.6
(0.6)
P 		51.8
(-3)
P 		81
B 90.6
(1.1)
P 		107
(3)
P 		64.9
(-2)
P 		106.7
(3)
P 		85.4
(0.4)
P 		56.4
(-3)
P 		51
C 88.4
(2)
P 		92.7
(3)
P 		75.5
(-1.1)
P 		71.5
(-2)
P 		75.8
(-1)
P 		67.4
(-3)
P 		25
avr 77.9
(-0.8) 		110.8
(3) 		68.2
(-1.9) 		88.5
(0.4) 		87.3
(0.3) 		58.5
(-3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192483_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7881
Sequence Type Exemplar sequence
Representative Public ID Y43F4A.1 NCBI
Target Description Y43F4A.1 /REP_DB=WormBase Gene ID /WP=CE16622 /TR=O62446 /GB=CAB16471.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=zinc metallopeptidase (M8 family)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002377(11), NM_001027699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002377 NCBI Caenorhabditis elegans Y43F4A.1, miscRNA. 11/11 None
NM_001027699 NCBI Caenorhabditis elegans Y43F4A.1a (Y43F4A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000026854 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13222670:13228832:1 11/11 None
SNAP00000026847 ENSEMBL cdna:SNAP chromosome:CEL140:III:13223610:13228832:1 11/11 None
Y43F4A.1a ENSEMBL cdna:known chromosome:CEL140:III:13222588:13228968:1 gene:Y43F4A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176737 2 1 NM_001027699 192483_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13222665-13228828(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y43F4A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16471 Hypothetical protein Y43F4A.1a [Caenorhabditis elegans] ref|NP_001022870.1| Y43F4A.1a [Caenorhabditis elegans] 0.0
blast CAE60045 Hypothetical protein CBG03556 [Caenorhabditis briggsae] 0.0
blast EAL27347 GA17800-PA [Drosophila pseudoobscura] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR001577 EMBL-EBI Peptidase M8, leishmanolysin 1.0E-126
Pfam IPR001577 EMBL-EBI Peptidase M8, leishmanolysin 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192483_AT
gcattgtgcaaccttgtaccattccaaaaagagctcccttcccaatatcgtaattttatg
agcctccccggagtgaaccctgatggagcaaaatattacggtggctcagttgaaatggct
gattattgcccgtttttacaagaattcgaatggaaactgatcgataaaactcaacacaag
gactcgagatgtgaacttgaagggaatggtaaagagggagaggatattctagaggtttat
ggagcaaattccaaatgtttcgaatttccgaaaccgtggactgagagaaagtgtgggagg
attcgagttttatcgcattatatggctgggtgttatgagcaccaatgcacaaatggaaca
ctctatgttggttcttataatgcaacagatatgtatccatgttacgctgaaaatcaaaaa
atacacatcaaaaaagttgttgatggatggcttcgagaaggttccctgatatgtccaaaa
tgtgaagattactgtaccaactgtggaccgcccatcgtcataccagattacattggagat
cctgaacttgatgagccttgctcttctaactttaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTGTGCAACCTTGTACCATTCC 160 307 1375 Antisense
GTACCATTCCAAAAAGAGCTCCCTT 36 459 1390 Antisense
TATCGTAATTTTATGAGCCTCCCCG 32 659 1420 Antisense
TCCCCGGAGTGAACCCTGATGGAGC 72 597 1439 Antisense
ATGGCTGATTATTGCCCGTTTTTAC 263 53 1489 Antisense
GAATTTCCGAAACCGTGGACTGAGA 520 325 1636 Antisense
GAAGGTTCCCTGATATGTCCAAAAT 82 335 1831 Antisense
ATTACTGTACCAACTGTGGACCGCC 156 13 1862 Antisense
CGCCCATCGTCATACCAGATTACAT 42 257 1883 Antisense
TCCTGAACTTGATGAGCCTTGCTCT 557 593 1914 Antisense
AGCCTTGCTCTTCTAACTTTAAATT 686 83 1928 Antisense
Sequence Source Affymetrix Proprietary Database