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[192478_at] Zinc finger, C2H2 type (3 domains)

Description K11D2.4 /REP_DB=WormBase Gene ID /WP=CE12124 /TR=O02283 /GB=CAB03472.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster 6grp_total > 33      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.7
(-3)
A 		4.6
(-0)
A 		4.6
(-0)
A 		5.5
(3)
A 		2
B 6.5
(3)
A 		4.6
(-0.5)
A 		3.5
(-2.5)
A 		3.2
(-3)
A 		3
C 3.5
(-1.7)
A 		4.9
(2.7)
A 		3.1
(-3)
A 		5
(3)
A 		2
avr 4.6
(2.4) 		4.7
(3) 		3.7
(-3) 		4.6
(2.4) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 8
(3)
A 		3.7
(-2.9)
A 		4.3
(-2)
A 		4.4
(-1.9)
A 		3.8
(-2.7)
A 		3.6
(-3)
A 		4
B 4.6
(-1.2)
A 		3.7
(-2.1)
A 		8.8
(3)
A 		3.5
(-2.3)
A 		3.7
(-2.1)
A 		2.8
(-3)
A 		6
C 10.1
(3)
A 		4.3
(-1.8)
A 		9.8
(2.8)
A 		8.4
(1.6)
A 		8.2
(1.4)
A 		2.8
(-3)
A 		7
avr 7.6
(3) 		3.9
(-1.9) 		7.6
(3) 		5.4
(0.1) 		5.2
(-0.2) 		3.1
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.4
(3)
A 		1
(-1)
A 		1.2
(1)
A 		0.8
(-3)
A 		1
B 2.1
(3)
A 		1.1
(-1.3)
A 		0.8
(-2.6)
A 		0.7
(-3)
A 		1
C 1.2
(1)
A 		1.4
(3)
A 		1.1
(0)
A 		0.8
(-3)
A 		1
avr 1.6
(3) 		1.2
(-0) 		1
(-1.5) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.5
(3)
A 		1.3
(1)
A 		0.9
(-3)
A 		1.1
(-1)
A 		1.1
(-1)
A 		0.9
(-3)
A 		1
B 1.6
(0.5)
A 		1.2
(-1.5)
A 		2.1
(3)
A 		0.9
(-3)
A 		1.5
(-0)
A 		1
(-2.5)
A 		1
C 3.7
(3)
A 		1.3
(-2.1)
A 		2.5
(0.4)
A 		1.7
(-1.3)
A 		2.6
(0.6)
A 		0.9
(-3)
A 		3
avr 2.3
(3) 		1.3
(-1.3) 		1.8
(0.9) 		1.2
(-1.7) 		1.7
(0.4) 		0.9
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2416
Sequence Type Exemplar sequence
Representative Public ID K11D2.4 NCBI
Target Description K11D2.4 /REP_DB=WormBase Gene ID /WP=CE12124 /TR=O02283 /GB=CAB03472.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060774 NCBI Caenorhabditis elegans K11D2.4 (K11D2.4) mRNA, complete cds. 11/11 None
K11D2.4 ENSEMBL cdna:known chromosome:CEL140:I:12531640:12535674:1 gene:K11D2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019742 5/11 Cross Hyb Matching Probes None
GENEFINDER00000003949 4/11 Cross Hyb Matching Probes None
SNAP00000003928 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12531570-12535605(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (3 domains)
Ensembl K11D2.4
Entrez Gene 187291 Entrez gene
SwissProt O02283 EMBL-EBI
WormBase CE12124 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03472 Hypothetical protein K11D2.4 [Caenorhabditis elegans] emb|CAB05558.1| Hypothetical protein K11D2.4 [Caenorhabditis elegans] ref|NP_493175.1| K11D2.4 [Caenorhabditis elegans] 0.0
blast CAE64113 Hypothetical protein CBG08722 [Caenorhabditis briggsae] 1.0E-114
blast XP_689862 PREDICTED: similar to zinc finger protein 420 [Danio rerio] 3.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 8.1E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.9E-6
Sequence
Target Sequence 
>C. ELEGANS:192478_AT
tcaaagcacgcggcggtcttcaacagcacatgagaatccataataacgagaaggcgtacg
tgtgcacgttttgtgccaaaagtttcacgcagaaaagtcatttggatcagcatgagcgga
ttcatacgggtgtaaagccgttcctgtgcgcattctgcggccgctcattccgtcaacgtt
cgcaacaaatcggtcacgaatccactcacttgactcacttttccacgtcatcagcgcagc
agacgcccacgcacggcggtggcggtggacaaacgacaccgtcttcttctgcgtcgtctg
ggtcgtcgggaagtaaaggagacgatggtgcacagtataatggaatgcttctccatccat
cgccacccactccgtccccggaacaacagcagaatcatctaaacatggcggccgctgtca
tgcagatgcaccatcacgccgcccgtcaacaccatgaaatttcgtcacttctcggcctca
accacgaatttgtacaccaacatgtgggcggagtctccgcacacgctacggcacaccaat
tcggtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAGCACGCGGCGGTCTTCAACA 425 629 557 Antisense
TCATTCCGTCAACGTTCGCAACAAA 279 619 721 Antisense
AAATCGGTCACGAATCCACTCACTT 396 117 743 Antisense
TTCCACGTCATCAGCGCAGCAGACG 161 701 777 Antisense
GGTGGACAAACGACACCGTCTTCTT 249 497 820 Antisense
ATCTAAACATGGCGGCCGCTGTCAT 264 11 953 Antisense
TGTCATGCAGATGCACCATCACGCC 58 559 972 Antisense
CCATGAAATTTCGTCACTTCTCGGC 610 271 1008 Antisense
TCTCGGCCTCAACCACGAATTTGTA 626 609 1026 Antisense
ATGTGGGCGGAGTCTCCGCACACGC 143 47 1058 Antisense
ACGCTACGGCACACCAATTCGGTGG 38 93 1079 Antisense
Sequence Source Affymetrix Proprietary Database