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[192475_s_at] similar to mammalian lectin VIP36

Description T04G9.3 /REP_DB=WormBase Gene ID /WP=CE23946 /TR=Q22170 /GB=AAD50512.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=similar to mammalian lectin VIP36
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 01      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 41      6grp_total > 09      4grp_total > 48      6grp_cgc > 10      6grp_high1_sub > De      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 932
1 2 3 4 range
A 594
(-2.8)
P 		969.2
(0.9)
P 		1173.6
(3)
P 		578.7
(-3)
P 		595
B 655
(-3)
P 		819.5
(-1.6)
P 		1344.9
(3)
P 		817.2
(-1.6)
P 		690
C 412.5
(-3)
P 		955.4
(1.6)
P 		1124.7
(3)
P 		470.9
(-2.5)
P 		712
avr 553.8
(-3) 		914.7
(0.3) 		1214.4
(3) 		622.3
(-2.4) 		661

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 725
1 2 3 4 5 6 range
A 824.7
(1.6)
P 		639.2
(-2.2)
P 		890.1
(3)
P 		784.5
(0.8)
P 		729.9
(-0.3)
P 		601.8
(-3)
P 		288
B 988.4
(2.8)
P 		703.9
(-0.3)
P 		791
(0.7)
P 		1007.8
(3)
P 		767.6
(0.4)
P 		451.5
(-3)
P 		556
C 1123.9
(3)
P 		644.6
(-1)
P 		757.7
(-0)
P 		635.5
(-1)
P 		790.4
(0.2)
P 		398.5
(-3)
P 		725
avr 979
(3) 		662.6
(-0.8) 		812.9
(1) 		809.3
(0.9) 		762.6
(0.4) 		483.9
(-3) 		495
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 216.3
(0.6)
P 		210.4
(0.4)
P 		306.8
(3)
P 		84.7
(-3)
P 		222
B 208.9
(-1.5)
P 		202.4
(-1.8)
P 		311.6
(3)
P 		174.2
(-3)
P 		137
C 136.6
(-1.9)
P 		274.7
(0.7)
P 		392
(3)
P 		79.4
(-3)
P 		313
avr 187.3
(-1) 		229.2
(0.1) 		336.8
(3) 		112.8
(-3) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 152
(-2.6)
P 		227.3
(3)
P 		193.9
(0.5)
P 		199
(0.9)
P 		220.3
(2.5)
P 		146.5
(-3)
P 		81
B 343.9
(3)
P 		234.3
(-0.7)
P 		192.1
(-2.2)
P 		266.9
(0.4)
P 		311.8
(1.9)
P 		168.4
(-3)
P 		176
C 416.6
(3)
P 		196.7
(-1.6)
P 		192.8
(-1.6)
P 		127.8
(-3)
P 		255.8
(-0.3)
P 		133.4
(-2.9)
P 		289
avr 304.2
(3) 		219.4
(-0.3) 		192.9
(-1.3) 		197.9
(-1.1) 		262.6
(1.4) 		149.4
(-3) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192475_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18128
Sequence Type Exemplar sequence
Representative Public ID T04G9.3 NCBI
Target Description T04G9.3 /REP_DB=WormBase Gene ID /WP=CE23946 /TR=Q22170 /GB=AAD50512.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=similar to mammalian lectin VIP36
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075750(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075750 NCBI Caenorhabditis elegans Intracellular LEctin family member (ile-2) (ile-2) mRNA, complete cds. 11/11 None
GENEFINDER00000034737 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:768599:770499:1 11/11 None
T04G9.3 ENSEMBL cdna:known chromosome:CEL140:X:768594:770753:1 gene:T04G9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034731 7/11 Cross Hyb Matching Probes None
SNAP00000034732 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:768598-770499(+) 100.0 100.0
Public Domain and Genome References
Gene Title similar to mammalian lectin VIP36
Gene Symbol ile-2
Ensembl T04G9.3
Entrez Gene 180423 Entrez gene
SwissProt Q22170 EMBL-EBI
WormBase CE23946 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584799_AT lectin, mannose-binding 2 cfa
CANINE_2:CFA.3799.1.A1_S_AT lectin, mannose-binding 2 cfa
DROSOPHILA_2:1626811_AT dm
DROSGENOME1:150488_AT dm
CHICKEN:GGA.1580.1.S1_AT similar to Vesicular integral-membrane protein VIP36 precursor (GP36b glycoprotein) (Lectin, mannose-binding 2) gga
HG-U133_PLUS_2:200805_AT lectin, mannose-binding 2 hs
HG-U133A:200805_AT lectin, mannose-binding 2 hs
HG-FOCUS:200805_AT lectin, mannose-binding 2 hs
HG-U133A_2:200805_AT lectin, mannose-binding 2 hs
HUGENEFL:U10362_AT lectin, mannose-binding 2 hs
U133_X3P:G5803022_3P_X_AT lectin, mannose-binding 2 hs
U133_X3P:G5803022_3P_AT lectin, mannose-binding 2 hs
HG-U95AV2:36955_AT lectin, mannose-binding 2 hs
HG-U95D:74891_AT lectin, mannose-binding 2 hs
HG-U95D:74893_G_AT lectin, mannose-binding 2 hs
HG-U95D:74895_AT lectin, mannose-binding 2 hs
U133_X3P:HS.306751.0.S1_3P_X_AT Lectin, mannose-binding 2 hs
U133_X3P:215656_3P_AT Lectin, mannose-binding 2 hs
HG-U133A_2:215656_AT Lectin, mannose-binding 2 hs
HG-U133_PLUS_2:215656_AT Lectin, mannose-binding 2 hs
HG-U133A:215656_AT Lectin, mannose-binding 2 hs
MU11KSUBA:AA667215_S_AT lectin, mannose-binding 2 mm
MG-U74AV2:93993_AT lectin, mannose-binding 2 mm
MG-U74BV2:115566_AT lectin, mannose-binding 2 mm
MG-U74BV2:112757_AT lectin, mannose-binding 2 mm
MG-U74AV2:161472_R_AT lectin, mannose-binding 2 mm
MOE430A:1423074_AT lectin, mannose-binding 2 mm
MOUSE430A_2:1423074_AT lectin, mannose-binding 2 mm
MOUSE430_2:1423074_AT lectin, mannose-binding 2 mm
MOE430A:1423075_AT lectin, mannose-binding 2 mm
MOUSE430A_2:1423075_AT lectin, mannose-binding 2 mm
MOUSE430_2:1423075_AT lectin, mannose-binding 2 mm
MU19KSUBC:TC35761_AT Lectin, mannose-binding 2 (Lman2), mRNA mm
MU19KSUBC:TC37151_AT Lectin, mannose-binding 2 (Lman2), mRNA mm
RG-U34C:RC_AI230208_AT lectin, mannose-binding 2 (predicted) rn
RAE230A:1373815_AT lectin, mannose-binding 2 (predicted) rn
RAT230_2:1373815_AT lectin, mannose-binding 2 (predicted) rn
RAE230B:1378437_AT Lectin, mannose-binding 2 (predicted) rn
RAT230_2:1378437_AT Lectin, mannose-binding 2 (predicted) rn
RG-U34C:RC_AI233231_AT Lectin, mannose-binding 2 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_508151 Intracellular LEctin family member (ile-2) [Caenorhabditis elegans] gb|AAD50512.1| Intracellular lectin protein 2 [Caenorhabditis elegans] 0.0
blast H89450 protein T04G9.3 [imported] - Caenorhabditis elegans 0.0
blast CAE63625 Hypothetical protein CBG08119 [Caenorhabditis briggsae] 1.0E-178
Protein Domains
Database ID Description E-Value
Pfam IPR005052 EMBL-EBI Legume-like lectin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508151.1 1 313-335
T04G9.3 1 313-335
GENEFINDER00000034737 1 313-335
Sequence
Target Sequence 
>C. ELEGANS:192475_S_AT
acttccgtggattggctgtgtttttggacacttatagtaatcataatgggccacatcagc
acggtcatccattcatttctgcaatggtttctgacggcagtcttcactatgaccacgaca
aagacggtacccatactcagctcggaggagaaaatactggatgtactgccaagtttcgta
ataaggatcatgacactcaagttcttatcagatatgttggagacactctttcgattttct
ctgacattgagaacaaaggaatatggaatttgtgtatgagcgtgaacaatgtgcaattgc
caaccggatattacatcggagtcagtgccgcaacgggagacttgtccgatgctcatgacg
ttgtgtccttgaaaatgttcgagcaggagtttgctcatgttgagcgtgttggagaggctg
atcgtcgcaacgttgtgccccatgctcaattcaccgcttcaccaagagatcacactgacg
acgcacgaccatctagccttggatggggtggaacgatcgctttggtgattgtgggggtta
ttgttcttgtcggaggacttggattcggttttgtctacttccagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTCCGTGGATTGGCTGTGTTTTT 623 103 437 Antisense
CGGTCATCCATTCATTTCTGCAATG 153 245 498 Antisense
TGACGGCAGTCTTCACTATGACCAC 321 569 528 Antisense
GTACCCATACTCAGCTCGGAGGAGA 131 457 563 Antisense
TACATCGGAGTCAGTGCCGCAACGG 677 641 748 Antisense
GCAACGGGAGACTTGTCCGATGCTC 430 319 766 Antisense
GATGCTCATGACGTTGTGTCCTTGA 193 413 784 Antisense
TTGGAGAGGCTGATCGTCGCAACGT 406 707 845 Antisense
CAAGAGATCACACTGACGACGCACG 642 183 899 Antisense
TTGTGGGGGTTATTGTTCTTGTCGG 673 707 965 Antisense
GATTCGGTTTTGTCTACTTCCAGAA 30 433 998 Antisense
Sequence Source Affymetrix Proprietary Database