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[192471_at] Drosophila SU(VAR)3-9 protein like

Description C41G7.4 /REP_DB=WormBase Gene ID /WP=CE08668 /TR=Q93368 /GB=CAB02841.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Drosophila SU(VAR)3-9 protein like
Cluster 6grp_total > 96      4grp_total > 16      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 76.8
(-3)
A 		128.3
(0.4)
P 		101.5
(-1.4)
P 		167.4
(3)
P 		91
B 80.2
(-3)
A 		85
(-2.8)
P 		110.6
(-1.7)
P 		221.6
(3)
P 		141
C 57.1
(-3)
A 		139.1
(0.8)
P 		139.5
(0.8)
P 		187.7
(3)
P 		131
avr 71.4
(-3) 		117.5
(-0.7) 		117.2
(-0.7) 		192.2
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 616
1 2 3 4 5 6 range
A 60.7
(-3)
A 		63.8
(-3)
A 		117
(-2.3)
P 		299.9
(-0.1)
P 		548.3
(2.9)
P 		554.4
(3)
P 		494
B 24.2
(-3)
A 		58.9
(-2.6)
A 		130.9
(-1.8)
P 		209.4
(-1)
P 		447.8
(1.6)
P 		576.8
(3)
P 		553
C 44.9
(-3)
A 		84.2
(-2.6)
P 		93.6
(-2.5)
P 		159.3
(-1.8)
P 		405.6
(0.6)
P 		640.5
(3)
P 		596
avr 43.3
(-3) 		69
(-2.7) 		113.8
(-2.2) 		222.9
(-1) 		467.2
(1.6) 		590.6
(3) 		547
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 28
(3)
A 		27.9
(2.8)
P 		26.5
(0.4)
P 		24.5
(-3)
P 		4
B 25.6
(-1.9)
A 		21
(-3)
P 		25.6
(-1.9)
P 		47.2
(3)
P 		26
C 18.9
(-3)
A 		40
(1.3)
P 		48.6
(3)
P 		31.7
(-0.4)
P 		30
avr 24.2
(-3) 		29.6
(0.1) 		33.6
(2.5) 		34.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 11.2
(-3)
A 		22.7
(-2.6)
A 		25.5
(-2.4)
P 		76.1
(-0.5)
P 		165.5
(3)
P 		135
(1.8)
P 		154
B 8.4
(-3)
A 		19.6
(-2.7)
A 		31.8
(-2.3)
P 		55.5
(-1.6)
P 		181.9
(2)
P 		215.1
(3)
P 		207
C 16.6
(-3)
A 		25.7
(-2.7)
P 		23.8
(-2.8)
P 		32
(-2.5)
P 		131.2
(0.5)
P 		214.4
(3)
P 		198
avr 12.1
(-3) 		22.7
(-2.6) 		27
(-2.5) 		54.5
(-1.6) 		159.5
(2) 		188.2
(3) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.479
Sequence Type Exemplar sequence
Representative Public ID C41G7.4 NCBI
Target Description C41G7.4 /REP_DB=WormBase Gene ID /WP=CE08668 /TR=Q93368 /GB=CAB02841.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Drosophila SU(VAR)3-9 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060128(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060128 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-328) (tag-328) mRNA, complete cds. 11/11 None
SNAP00000008717 ENSEMBL cdna:SNAP chromosome:CEL140:I:9527381:9529313:1 11/11 None
GENEFINDER00000008729 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9527381:9529313:1 11/11 None
C41G7.4 ENSEMBL cdna:known chromosome:CEL140:I:9527758:9529313:1 gene:C41G7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9527688-9529244(+) 100.0 100.0
Public Domain and Genome References
Gene Title Drosophila SU(VAR)3-9 protein like
Gene Symbol tag-328
Ensembl C41G7.4
Entrez Gene 183391 Entrez gene
SwissProt Q93368 EMBL-EBI
WormBase CE08668 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02841 Hypothetical protein C41G7.4 [Caenorhabditis elegans] ref|NP_492529.1| Temporarily Assigned Gene name family member (tag-328) [Caenorhabditis elegans] 0.0
blast AAK84599 Hypothetical protein Y24D9A.2 [Caenorhabditis elegans] ref|NP_500555.2| Y24D9A.2 [Caenorhabditis elegans] 1.0E-116
blast AAK84599 Hypothetical protein Y24D9A.2 [Caenorhabditis elegans] ref|NP_500555.2| Y24D9A.2 [Caenorhabditis elegans] 1.0E-106
blast CAE64867 Hypothetical protein CBG09666 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-45
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-45
Pfam IPR001214 EMBL-EBI Nuclear protein SET 1.6E-45
Sequence
Target Sequence 
>C. ELEGANS:192471_AT
gattacgttcatctgttctgattccagctggcacggcagtattggaatttactggagaaa
tagttgagcgtaatcaactagatcgtgacagtcaagattatgcttatcagctcacagata
aagacaattcgaactggaggcgtcttttggatacaatgaaattctctgatgactataaaa
agtttttgaagaagttgagctacgaagaatttttcattgatccaaaagccaaaggaaacg
ttggacgaatgatttgtcatagctgttcgccgaatttagaaatcgttcgtgtctaccaga
aaggtctttcaccagctcacgtacatctcgttttcatttcgctgttaaacatttatccag
gaacaccgcttacaatggactacggatacaactacatgaaaaatcatctcaatggaaaat
gcgagtgcggaagttttgcatgtttgaacagaaaaagctcctgtcatacaaatatgtcat
tcggagatttcgcagcttattatcgcaaattggaccatcaacagtgggaaagttggcaca
agaacatctgcgaacctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTACGTTCATCTGTTCTGATTCC 23 431 644 Antisense
TGATTCCAGCTGGCACGGCAGTATT 108 565 662 Antisense
ACAATTCGAACTGGAGGCGTCTTTT 268 115 767 Antisense
ATTTGTCATAGCTGTTCGCCGAATT 125 17 895 Antisense
GAAATCGTTCGTGTCTACCAGAAAG 219 363 922 Antisense
CCAGAAAGGTCTTTCACCAGCTCAC 18 273 939 Antisense
AGCTCACGTACATCTCGTTTTCATT 404 79 957 Antisense
CATCTCGTTTTCATTTCGCTGTTAA 146 213 967 Antisense
GGAACACCGCTTACAATGGACTACG 217 529 1003 Antisense
GTCATTCGGAGATTTCGCAGCTTAT 522 467 1119 Antisense
GGCACAAGAACATCTGCGAACCTCT 94 535 1178 Antisense
Sequence Source Affymetrix Proprietary Database