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[192470_at] Zinc finger, C4 type (two domains)

Description T13F3.2 /REP_DB=WormBase Gene ID /WP=CE16408 /TR=O18086 /GB=CAB07670.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 48      4grp_total > 09      6grp_cgc > 18      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 23.7
(-1.1)
A 		8
(-3)
A 		15.2
(-2.2)
A 		58.9
(3)
A 		51
B 16.4
(-3)
A 		46.5
(3)
A 		32.3
(0.2)
A 		25
(-1.3)
A 		30
C 3.9
(-2.8)
A 		1.5
(-3)
A 		9.5
(-2.2)
A 		59.4
(3)
A 		58
avr 14.7
(-3) 		18.7
(-2.3) 		19
(-2.2) 		47.8
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 29.6
(0.3)
A 		8.3
(-2.8)
A 		20.1
(-1.1)
A 		7
(-3)
A 		21
(-0.9)
A 		47.8
(3)
A 		41
B 26.2
(0.3)
A 		31.8
(1.5)
A 		14.3
(-2.1)
A 		14.7
(-2)
A 		9.8
(-3)
A 		39.3
(3)
A 		30
C 19
(0.1)
A 		35.4
(3)
A 		1.3
(-3)
A 		3.1
(-2.7)
A 		14.3
(-0.7)
A 		9.1
(-1.6)
A 		34
avr 24.9
(1.2) 		25.2
(1.3) 		11.9
(-2.1) 		8.3
(-3) 		15
(-1.3) 		32.1
(3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.6
(3)
A 		1.7
(-3)
A 		4
(-1)
A 		8.6
(3)
A 		7
B 5.2
(-3)
A 		11.5
(3)
A 		7.5
(-0.8)
A 		5.3
(-2.9)
A 		6
C 1.3
(-2.4)
A 		0.4
(-3)
A 		3.3
(-1.2)
A 		10
(3)
A 		10
avr 5
(-2.1) 		4.5
(-3) 		4.9
(-2.3) 		8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.5
(-0.7)
A 		3
(-2.3)
A 		4.4
(-1.4)
A 		1.8
(-3)
A 		6.3
(-0.2)
A 		11.6
(3)
A 		10
B 9.1
(-0)
A 		10.6
(0.8)
A 		3.5
(-3)
A 		3.9
(-2.8)
A 		4
(-2.7)
A 		14.7
(3)
A 		11
C 7
(0.8)
A 		10.8
(3)
A 		0.3
(-3)
A 		0.6
(-2.8)
A 		4.6
(-0.5)
A 		3
(-1.5)
A 		11
avr 7.2
(1) 		8.1
(1.7) 		2.7
(-2.5) 		2.1
(-3) 		5
(-0.7) 		9.8
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13947
Sequence Type Exemplar sequence
Representative Public ID T13F3.2 NCBI
Target Description T13F3.2 /REP_DB=WormBase Gene ID /WP=CE16408 /TR=O18086 /GB=CAB07670.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074702(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074702 NCBI Caenorhabditis elegans T13F3.2 (T13F3.2) mRNA, complete cds. 11/11 None
T13F3.2 ENSEMBL cdna:known chromosome:CEL140:V:16261069:16264205:1 gene:T13F3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028761 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16261068-16263166(+) 89.78 89.78
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-218
Ensembl T13F3.2
Entrez Gene 188479 Entrez gene
SwissProt O18086 EMBL-EBI
WormBase CE16408 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07670 Hypothetical protein T13F3.2 [Caenorhabditis elegans] ref|NP_507103.1| T13F3.2 [Caenorhabditis elegans] 0.0
blast CAE69640 Hypothetical protein CBG15881 [Caenorhabditis briggsae] 1.0E-104
blast CAB07671 Hypothetical protein T13F3.3 [Caenorhabditis elegans] ref|NP_507104.2| Nuclear Hormone Receptor family member (nhr-127) [Caenorhabditis elegans] 9.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.3E-15
Sequence
Target Sequence 
>C. ELEGANS:192470_AT
gtgccacgtggttaacgcattcttcattttttcaaagcttaactgaaaccgaaaatttat
tgattttaaaatcaacgtggcatgtgtggtcttggctagaacttttgtccgtttctgttg
aaatatttgggaatcaagtctgcgaggaaaagattgtatttctatccgaaaaaattgcag
tcgacatagtgaaggttttccggtatattttgaaacccctaaacaaacaggaaaagagaa
aagttgaaaaggagctaaacccgatatttcacatactttttgatgacgtggcaagaaaat
tacagaatttaaagccaagttcattggagataaattatatgctgtggcagttagtctggt
ttgtagctgaaaaagttcttaacgaagacaacctgcggcatggggaacaatatacaaatc
aattagccagcgacctgcataatcactacaaaaacgatctccacttagagcaatatgcac
aaagagttctgaaaatgatggcaattagctcggaaaatgagccaaatttgccgtgctcgg
gaaatattggaaaaagagattttccgaatttgccaagctcgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCCACGTGGTTAACGCATTCTTC 136 479 587 Antisense
GGTTAACGCATTCTTCATTTTTTCA 603 505 596 Antisense
CAACGTGGCATGTGTGGTCTTGGCT 497 187 659 Antisense
GGTCTTGGCTAGAACTTTTGTCCGT 526 503 674 Antisense
GGAGCTAAACCCGATATTTCACATA 29 521 837 Antisense
ATGCTGTGGCAGTTAGTCTGGTTTG 230 43 925 Antisense
AACGAAGACAACCTGCGGCATGGGG 203 145 967 Antisense
CAAATCAATTAGCCAGCGACCTGCA 512 191 1001 Antisense
CAGCGACCTGCATAATCACTACAAA 321 203 1014 Antisense
GAGCCAAATTTGCCGTGCTCGGGAA 404 383 1105 Antisense
TTTTCCGAATTTGCCAAGCTCGACA 59 677 1146 Antisense
Sequence Source Affymetrix Proprietary Database